Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4988 ATGGAAAAGGGGGATTTTTCTGAGATGCTGTCAAGGATGAAAGCCTTGGCTGATGAGGTTGTTAAAGCTAAGAAATCTGAAATTGAGGTAGAGGCTTTTTCTGAGTTTGGAATGTTGGTGGAGAAATTGCTACCAATCTTGAATGAATTGAGTGATAAAAGCACTGTTTTGGACAAGCCTTCGATTCGAAAATCGTTGGAATCTCTTGAGAATGAGTTACGTCGTGCTAGAACTTTAACGAAAAGCTTGAATTTGAGACATCCAGTTAAGCAAATTGAGGACATGACGCATGATATCGGCCGGTCGTTAGGAGTTTTGCTTGTTGCCAGCCTTGAAGTGTCTATTGATTTTAGAGAACAGATTTGTATATTGCAAAGACAGATGATGAATGCAAGATTTGATGGCATTTCGAGTATGACTTCAAGTCCAAAATCGGAATTTTTTGCGGGTGAAACGAAGGCAGTTGGGGAAATAGAAGAGGAAATAATTGATGTTTCTATTGATGATGTGGTTTTGCAACTTAAGAATGGCAATGATGAAGAATTTGCAGTTTCACTTCTGAGACTAAAGGAGTTCTTGAGGAATGAGAAATTGGACAGCGGTTTGATTAACGAGGAAGCAACTATTTCCATTCTTTTCAATCGGCTAAGTTCGTGTAAGGCAGATAATAGGCTCGCCATAATTCAATTGCTAAGACGAATTGCTTTCGGAAATGACGAGAAAAAGGAGAAGATGGTCGAGGTTGAGTTTTTATCGGCAGTGGTGAAGTCGCTTACGAGGGATTCAGAAGAGAGGAGGGAAGCTGTAGGTTTGTTGCTAGACCTCTCTAACGTTCCAGCAGTTCGAAGGCGGATCGGAAGAATTCAAGGCTGTATCGTTATGTTGGTCGCCATTCTAAACAGCGATGACTCGGTTGCTTCACACGACGCTGCAAAGTTGTTGGATATTTTGTCTAGTAATAATCAGAATGCACTTCATATGGCGGAGGCCGGTTACTTTAGGCCGCTAGTTCAGTATTTGAAGGAAGGCTCTGACATGAACAAGATCCTAATGGCAACAGCACTTTCTAGGTTGGAACTTACCGATAACAGCAAACTTACTCTCGGAGAAGATGGAGCAATCGAGCCTCTTGTCAAAATGTTCGTCACGGGGAAACTTGAATCCAAGTTATCATCTCTAAACGCGCTACAAAATCTGTCTAGCTTGACCGAAAACGTGCAACGTTTAATTCAATCAGGAATTACGGGATCTTTGCTACAACTTCTTTTCTCGGTAACATCTGTGCTCATGACTCTAAGGGAGCCAGCATCAGCCATTCTTGCAAGAATTGCTCAGTCGGAATCCATTCTCGTCAACGAAGATGTAGCTCAACAGATGCTTTCACTTTTGAATCTTTCGAGCCCGATAATTCAAAGTCATCTATTAGAAGCTCTCAATAGCATGTCTTCTCATCTCGGCGCATCCAAAGTGAGAAGAAAAATGAAAGAAAAAGGTGCACTTCAACTACTCTTACCCTTTCTTAAAGAAAGTAACACCAAAATCCGGTGTAAGGTCTTGAATTTGCTATACACGCTCTCTAAAGATATAACCGATGAACTGACCGAATATCTCGACGAAACTCATCTTTTAAACATTGTTAATATTGTCTCAACGTCCACGTCGGAGAGTGAAAAAGCAGCTGCGGTTGGCATCCTGAGTAATCTTCCTGCTAGCGATAAAAAAGTAACAGATGCTCTAAAGCGAGCAAATTTGCTACAGATTTTGATATCAATTTTGTATTCTAGCAATGCAAGTAAATCACCATCAACAAATAGCTTAACCGAGAGTGCCACCGGTGTTATAAACCGCTTCACGAATTCATCTGACAAGAAACTACAACTTGTTTCAGTTCAACACGGGATAATTCCGTTGCTCGTAAAATTACTGTCAACAGGCTCACCGATCACAAAATCAAGGGCTGCAAACTCTTTAACTCAACTATCACAAAACTCTCTTTCTCTTAGGAAATCTAGAAAATCAAGATGGTTATGTGTTCAACCTTCAGCAAATGCATATTGCGAAGTTCATGATGGATATTGCTTTGTCAATAGCACATTTTGTTTAGTGAAAGCGGGCGCGGTTTCGCGACTAATCGAAATATTGGAAGATAAAGAGAAGGAAGTAGTTGAAGCTTCTCTTGTTGCACTTTCAACTCTTTTACAAGATGAAATTTGGGAAAATGGTGTGAATTTCATTGCCAAATTATCAGGTGTGCAAGCTATAGTAAAAAGTTTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCATTATGGATGTTGGAGAGAATATTTAAGATTGAAGAACATAGAGTGAAATATGGAGAATCTGCTCAAGTGGTGCTTATTGATTTGGCGCAAAAAAGTGATTCTAGATTGAAGTCCACAGTTGCAAAAGTATTAGCTGAGCTAGAACTCTTGCAAGATCAATCAAGTTACTTTTGA 2481 0.399 MEKGDFSEMLSRMKALADEVVKAKKSEIEVEAFSEFGMLVEKLLPILNELSDKSTVLDKPSIRKSLESLENELRRARTLTKSLNLRHPVKQIEDMTHDIGRSLGVLLVASLEVSIDFREQICILQRQMMNARFDGISSMTSSPKSEFFAGETKAVGEIEEEIIDVSIDDVVLQLKNGNDEEFAVSLLRLKEFLRNEKLDSGLINEEATISILFNRLSSCKADNRLAIIQLLRRIAFGNDEKKEKMVEVEFLSAVVKSLTRDSEERREAVGLLLDLSNVPAVRRRIGRIQGCIVMLVAILNSDDSVASHDAAKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDNSKLTLGEDGAIEPLVKMFVTGKLESKLSSLNALQNLSSLTENVQRLIQSGITGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQSHLLEALNSMSSHLGASKVRRKMKEKGALQLLLPFLKESNTKIRCKVLNLLYTLSKDITDELTEYLDETHLLNIVNIVSTSTSESEKAAAVGILSNLPASDKKVTDALKRANLLQILISILYSSNASKSPSTNSLTESATGVINRFTNSSDKKLQLVSVQHGIIPLLVKLLSTGSPITKSRAANSLTQLSQNSLSLRKSRKSRWLCVQPSANAYCEVHDGYCFVNSTFCLVKAGAVSRLIEILEDKEKEVVEASLVALSTLLQDEIWENGVNFIAKLSGVQAIVKSLEVGDAKVQEKALWMLERIFKIEEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQDQSSYF* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4988 826 SMART arm_5 622 662 IPR000225 GO:0005515
Psa5g4988 826 SMART arm_5 238 277 IPR000225 GO:0005515
Psa5g4988 826 SMART arm_5 572 619 IPR000225 GO:0005515
Psa5g4988 826 SMART arm_5 361 401 IPR000225 GO:0005515
Psa5g4988 826 SMART arm_5 738 778 IPR000225 GO:0005515
Psa5g4988 826 SMART arm_5 402 445 IPR000225 GO:0005515
Psa5g4988 826 SMART arm_5 320 360 IPR000225 GO:0005515
Psa5g4988 826 SMART arm_5 487 527 IPR000225 GO:0005515
Psa5g4988 826 SMART arm_5 694 734 IPR000225 GO:0005515
Psa5g4988 826 Gene3D - 551 824 IPR011989 -
Psa5g4988 826 SUPERFAMILY ARM repeat 167 422 IPR016024 -
Psa5g4988 826 SUPERFAMILY ARM repeat 350 781 IPR016024 -
Psa5g4988 826 Gene3D - 189 361 IPR011989 -
Psa5g4988 826 Coils Coil 59 86 - -
Psa5g4988 826 Gene3D - 362 549 IPR011989 -
Psa5g4988 826 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 826 - -
Psa5g4988 826 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 2 826 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4988 177 826 U-box Gene Family AT1G20780 28.426 1.83e-49 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4988 K08332 - gmx:100791453 1217.6