Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4981 ATGGAGGAAGAGAATCAAGAAGTGAAATCATTTAATGATCTAGGCTTATCTGAGCAATTGGTGGAAGCTTGTGACAAATTGGGTTGGAAAGCACCGCTAAAAATTCAAATTGAAGCAATTCCTCTTGCTCTAGAAGGAAAAGATGTGATTGGACTTGCCCAAACGGGTTCTGGTAAGACTGGGGCTTTTGCTCTTCCGATATTGCACGCACTCTTAGAAGCACCACAGCCAAACCATTTTTTTGCTTGTGTATTGTCTCCCACAAGGGAGCTTGCTATACAAATTTCTGAACAGTTTGAAGCTTTAGGAACTGAAATTGGTGTCAAATGTGCTGCGATTGTTGGAGGCATTGACATGGTACAACAATCCCTCAAGCTAGCAAAGAAGCCTCATATTATTGTTGGGACTCCTGGCCGTGTCTTGGATCACCTAAAAAACACCAAAGGATTTTCTCTCAGTAAATTAAAATACTTGGTCTTAGATGAGGCAGACAGGCTATTGAATGAGGATTTTGAAGAATCACTTAATGAGATTTTAGGAATGATCCCTCGCGAGCGAAGGACATTCCTTTTTTCTGCTACAATGACAAAGAAGGTCGAGAAGCTCCAAAGGGTTTGTTTAAGAAATCCTGTTAAGATTGAAGCATCAACCAAGTATTCTACCGTGGACACACTGAAGCAACAACTCCGCTTCTTGCCAGCAAAACATAAGGATTGCTACCTCGTGTATATTCTCACTGAAATGGCCGGAAGTACATCAATGGTGTTCACTCGGACATGTGACGCAACTCGGCTTCTTGCTTTGATTCTTAGAAATCTCGGTTTGAAAGCCATCCCAATTAATGGTCATATGAGTCAGCCCAAGCGACTTGGAGCCTTGAATAAGTTCAAGTCTGGGGATTGCAATATTCTTCTTTGTACTGACGTAGCTAGCAGAGGACTCGATATTCCAGCAGTGGATATGGTCATTAACTATGACATTCCCTCAAACTCCAAAGATTACATTCATCGTGTGGGAAGGACTGCTCGCGCAGGGCGCTCTGGGGTTGCCATTTCCCTTGTGAACCAATATGAGCTCGAATGGTTCCTTCAGATAGAGAAGCTTATAGGCAAAAAGTTACCAGAGTATCCCGCACAACCGGAGGAAGTTTTGCTTTTGGAAGAGCGTGTTGGTGAAGCCAAAAGATTAGCAGCAACGAAAATGAAAGAAGCCGGAGGGAAGAAGAAACGGAGGGGCGAAGATTCAGGAGAGGATGAGGATATTGACAAATACTTTGGTCTCAAAGATAGAAGAAAATCTTCTTCTAAGAAGTTTAGAAGATAA 1323 0.4255 MEEENQEVKSFNDLGLSEQLVEACDKLGWKAPLKIQIEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLEAPQPNHFFACVLSPTRELAIQISEQFEALGTEIGVKCAAIVGGIDMVQQSLKLAKKPHIIVGTPGRVLDHLKNTKGFSLSKLKYLVLDEADRLLNEDFEESLNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTLKQQLRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWFLQIEKLIGKKLPEYPAQPEEVLLLEERVGEAKRLAATKMKEAGGKKKRRGEDSGEDEDIDKYFGLKDRRKSSSKKFRR* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4981 440 Pfam Helicase conserved C-terminal domain 240 345 IPR001650 -
Psa5g4981 440 Gene3D - 219 391 IPR027417 -
Psa5g4981 440 PANTHER RNA HELICASE 2 420 - -
Psa5g4981 440 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
Psa5g4981 440 Gene3D - 1 218 IPR027417 -
Psa5g4981 440 PANTHER BNAC02G41920D PROTEIN 2 420 - -
Psa5g4981 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 366 IPR027417 -
Psa5g4981 440 SMART ultradead3 28 228 IPR014001 -
Psa5g4981 440 MobiDBLite consensus disorder prediction 397 425 - -
Psa5g4981 440 CDD SF2_C_DEAD 225 354 - -
Psa5g4981 440 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Psa5g4981 440 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Psa5g4981 440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 384 IPR001650 -
Psa5g4981 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
Psa5g4981 440 SMART helicmild6 264 345 IPR001650 -
Psa5g4981 440 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4981 Psa-Chr5 441883301 441892738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4981 8 384 Eukaryotic Initiation Factors Gene Family AT3G19760 31.496 1.21e-65 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4981 K14777 - gmx:100775796 749.199