Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4980 ATGGTTCAAAGAAAGGTCCCAAACAAGCTTAGTATCCAAACACAACATGTTAAATCAGAGAAATTTTCAACAAACATGAAACTATCTTCTTCATCTTCTCCTCATCAAAACCAAGATGAAAAAAGTAAACTTTTTGATATGAAGAAGAAAATGAAGAAATCAAACTCAATCAATCTCTCTGATCTTGAGACTCTTCAACTTCATTCAACACCAGTTTCAAGAAAAACTACAAAACAAGATGGTTCACCAAATTACATGAAGCCCACAAGTAGTTCACAATCAAAAAAGGAACTTTTTCATGTAAGTCTTAAAAAAACTCAATCTTGTTCTGTTTCTAAGAATCTTGATAGAAAAATTTCAAGTGATTATTCAAAAGCTACATGTAAAAAACCTAGTTTGAGTTTGGTTAGAACATTAACAAAAACTACTAGTTTTAAGGGTTCTAGAAATTTTCCTAGAAGAGCTACTTGTTCTTCAACTTTGAAAGATGCAAACTTTCCTTCATATCTTGAGCTTAATCATGGTGGAACTGAGTTAGAGGGAACTTCAGTTAGGAAGGTTTGTTCATATAGTTATTGTTCTCTTAATGGGCATCATCATCATCATGGTGATTTGCCTCCTTTGAAGACGTTTGTGTCTTCGAGGAGGCGCGTGTTGAAGCGTGTGAAGCTTGAAGCGTTGAGTCCTCGAAGTCGAAGATTGAAGACGACGTGTGAGGTAGAAAAGAGGGACTGTGATGTTGAGCGGAATGTGTTTGATGAAAAACCTGAATGTGATGAAATTGATATGGATTTCTTCATTGAAATCTATGCTAGTGGAAAAAAAGATGAGGAATTGAAAGGAGAAGAAGAAATTGGAAAGGCCAATTTTCTGGACGAGGTTGAGGATTATGAAGATGTCATCGAGTCTACAATTGAAGATGATGGTGTAGAAGCAGATTTTCTGAAAGAGGTTGAGGATCAAGAGAAAAGCGAAGATGCGGACGAAGAAGAACAATCGAGTTGGTCTCATGAAGAAATGAGTATGGAAGATGTTGATAACAATACGGATGATTATTCCGAAGCCGATGATATGAAGTGTGATGACGAACAGTTTTATGGATTTGATCAAGAGCATGATGCTGATTCCTCTGTTTACGCGGACGAGGAAAATGACTCGAAAGATGAATCTTTGTCTCAGAGTTCTCATGACATATCAGTGACATGGTTAGACGATATCATTAGCAGCTATTACGATGACATTATTCTGTTTGATGAAACACTCAAAGAACACAAATCTGAAGAAATCATCTATCTTGAAGACGAACCTCTTGATGGCATGATTAGTTTTGTCCTTGACGACAAAATTGGAAGCAACGAGACTCAAGATATCGGTTACCCTACCAGTGACGTCGATTGTGACCAATCTTTGGTAGATGAAATATTTGATTACCTAACAAATTCCGAAGAGAAAGTTGATGAGACTAGCGAAGAGAACAAAGATTTCAAGCGAGGGGAAAAAAACCAAATTCAAACGTCTACGAATGAATTTGAACTTTGTTCCTTGAAGCTAACAATGACAGACCAAACTGTTACCGCTGACGTGATAACTCATGGACACGACAACCATATTCCATTAGTCTATGTTGTTGAAGAAAGCATCAAAGATATTCAAAATCAAGGAAAAAGTAATAAAAGATCAAGTTGCGTAGTCGAGGAAGATGAAAATGCAAGGGAGAATTGGAAAGGTGTGATTAGAAGAAAGATGTGTGTTGACGACGATGATGAGATGAGGAAGTTCAATCCAAGAGATCCGAATTTCCTTCCATTGGTTCCTGAAAAAGAAAAAGAAAAAGTCGATTTGAGGCATCAAATGATGGACGAGCGAAAGAATGCGGAGGATTGGATGGTTGATTGTGCACTAAGACAAGTTGTTAACAAGCTTGCTCCTGCTAGGAAGAAGAAGGTTGCATTGCTAGTTGAAGCTTTTGAAACTGTTATACCTAAATGTGAATCACATTTGAGAAACAATTCAAGGTTTGTTCATGCATGCTAG 2034 0.3697 MVQRKVPNKLSIQTQHVKSEKFSTNMKLSSSSSPHQNQDEKSKLFDMKKKMKKSNSINLSDLETLQLHSTPVSRKTTKQDGSPNYMKPTSSSQSKKELFHVSLKKTQSCSVSKNLDRKISSDYSKATCKKPSLSLVRTLTKTTSFKGSRNFPRRATCSSTLKDANFPSYLELNHGGTELEGTSVRKVCSYSYCSLNGHHHHHGDLPPLKTFVSSRRRVLKRVKLEALSPRSRRLKTTCEVEKRDCDVERNVFDEKPECDEIDMDFFIEIYASGKKDEELKGEEEIGKANFLDEVEDYEDVIESTIEDDGVEADFLKEVEDQEKSEDADEEEQSSWSHEEMSMEDVDNNTDDYSEADDMKCDDEQFYGFDQEHDADSSVYADEENDSKDESLSQSSHDISVTWLDDIISSYYDDIILFDETLKEHKSEEIIYLEDEPLDGMISFVLDDKIGSNETQDIGYPTSDVDCDQSLVDEIFDYLTNSEEKVDETSEENKDFKRGEKNQIQTSTNEFELCSLKLTMTDQTVTADVITHGHDNHIPLVYVVEESIKDIQNQGKSNKRSSCVVEEDENARENWKGVIRRKMCVDDDDEMRKFNPRDPNFLPLVPEKEKEKVDLRHQMMDERKNAEDWMVDCALRQVVNKLAPARKKKVALLVEAFETVIPKCESHLRNNSRFVHAC* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4980 677 Pfam Plant calmodulin-binding domain 558 661 IPR012417 GO:0005516
Psa5g4980 677 MobiDBLite consensus disorder prediction 57 96 - -
Psa5g4980 677 SMART CaM_binding_2 549 661 IPR012417 GO:0005516
Psa5g4980 677 Coils Coil 478 498 - -
Psa5g4980 677 MobiDBLite consensus disorder prediction 375 395 - -
Psa5g4980 677 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 1 509 - -
Psa5g4980 677 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 481 673 - -
Psa5g4980 677 MobiDBLite consensus disorder prediction 1 96 - -
Psa5g4980 677 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 481 673 IPR044681 GO:0005516
Psa5g4980 677 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 1 509 IPR044681 GO:0005516
Psa5g4980 677 MobiDBLite consensus disorder prediction 318 345 - -
Psa5g4980 677 MobiDBLite consensus disorder prediction 1 38 - -
Psa5g4980 677 MobiDBLite consensus disorder prediction 375 392 - -
Psa5g4980 677 MobiDBLite consensus disorder prediction 39 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4980 Psa-Chr5 441883301 441886109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4980 81 677 Calmodulin-binding Proteins AT2G38800 33.226 5.71e-62 216