Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4963 ATGGGATCTAACTATGAAAATATTCACAATCTTCAAAAATGTTCATCAGTTGAAGGAGAGAATGATGATGGTGATGATGCATGTCTCTCTGCTATGCTTCTTTGTTGTGGTCCAATGATTTACACTTCAGTATTGAAAGCTTCAATTGAACTAAACTTGTTTGAGATCATTTATAAGGCAAATCCACCATGTGTTTCAGCGTCTTATGTTGCTTCAATGCTACAACAAACAACACAACATCCTCAATTGGCTCGAAGACTCGACCGAATGCTGTGTCTTCTTGCAAGCCATGATCTTCTTGTTTGTTCCGCAAGAACTAATGAAGAAGGTGGGAGTGAAAGAGTTTATAAATTGTCTTTGGCTGGTAAATACTTTGTTAATGATGAGAAGAATGGATCTGTTGCTTTGTTCTCAACATTCATGAATCACCCAAACCTAATGGAAGCATTGAACAATTTTAAGGAGGTACTATCGAATTGTGACAAGGGACTATACATGAAAGTTCATGGAATGGCTGTTTATCAAGGAATACAGTCTGATCCAGCATGGAATCATGTGTTTAATAGAGCAATGGGTGATATTTGCACAATAGAAATGAAGAAGATATTAGAAAAATACAAAGGATTTGAAGGAATATCATTGTTGGTTGATGTTGGAGGAGGAATTGGACAAAGTTTGAATATGATTATATCTAAGTATCCTTCTATAAATGGCATTAATTTTGATTTACCCCAAGCTATACTACACAATTGGTCTGATGAAAACTGTCTCAAAGTTCTAACTAAGTGCTACAAAGCTTTGCCACAACATGGTAAAGTGATTGTTGTGGACTTCATCATGCCTCAAGAAATTCATCATACAAAAGCAGATAAGTTGATTACAAGCTTTGATAATCTCATGTTTCTAGATGGTGGTGTTGAAAGAACAGAGAAAGAGTTTGAAAACCTATGCAAATGTTCTGGCTTTTCTAGTTTTCATGTTGTTTGTCTTGCTTTCTCTGCTCTAGGAGTGATGGAATTTTATAAATAA 1029 0.3537 MGSNYENIHNLQKCSSVEGENDDGDDACLSAMLLCCGPMIYTSVLKASIELNLFEIIYKANPPCVSASYVASMLQQTTQHPQLARRLDRMLCLLASHDLLVCSARTNEEGGSERVYKLSLAGKYFVNDEKNGSVALFSTFMNHPNLMEALNNFKEVLSNCDKGLYMKVHGMAVYQGIQSDPAWNHVFNRAMGDICTIEMKKILEKYKGFEGISLLVDVGGGIGQSLNMIISKYPSINGINFDLPQAILHNWSDENCLKVLTKCYKALPQHGKVIVVDFIMPQEIHHTKADKLITSFDNLMFLDGGVERTEKEFENLCKCSGFSSFHVVCLAFSALGVMEFYK* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4963 342 Pfam O-methyltransferase domain 162 246 IPR001077 GO:0008171
Psa5g4963 342 Gene3D Vaccinia Virus protein VP39 126 246 IPR029063 -
Psa5g4963 342 SUPERFAMILY "Winged helix" DNA-binding domain 26 129 IPR036390 -
Psa5g4963 342 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 340 IPR029063 -
Psa5g4963 342 Gene3D Vaccinia Virus protein VP39 247 330 IPR029063 -
Psa5g4963 342 PIRSF O-mtase 245 342 IPR016461 GO:0008168
Psa5g4963 342 PIRSF O-mtase 10 248 IPR016461 GO:0008168
Psa5g4963 342 Pfam Dimerisation domain 44 95 IPR012967 GO:0046983
Psa5g4963 342 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 247 - -
Psa5g4963 342 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 246 342 - -
Psa5g4963 342 PANTHER O-METHYLTRANSFERASE 1 247 IPR016461 GO:0008168
Psa5g4963 342 PANTHER O-METHYLTRANSFERASE 246 342 IPR016461 GO:0008168
Psa5g4963 342 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 342 IPR016461 GO:0008168
Psa5g4963 342 Gene3D - 9 125 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4963 Psa-Chr5 440890409 440893079 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4963 25 332 Monolignol Biosynthesis Gene Families AT5G54160 40.058 3.00e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4963 - - cam:101492092 549.666