Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4935 ATGAGTGGTGTTTATAATGCAGAAACAAGTTCTCTAGTAGTTCCTTTGTTTAAACCATGGATGGAGCAATTTTCTTCTATGCTGGAAATTCCAGTTCAGTCTGAAAATCCAGATGATTGGAGCATCAGAATGGAGGTTCTGAAATGTTTGAATCAGTTTATTCAGAATTTCTCAAGTCTAATTAAAAGTGAATTTGAGGCTGTGTGGGACGATCCGTGCTGTGATCTAACTGCCAGTTTGAGTAAGTTGCTCGATGTCTCGGATAATACATTTTGGATAACTGGGTGGGTTCATTTCAGGGTGCAATCAAATGGCATTCATTTTCAATGGTCAAGGTTAATGTGTGCTTTAGAAGGAAACTATCTGGTGTGTGAAGATGCTCATGAGTCAATAGATCAATACTCCAAAGAGCTTGATAAACTTCAGTGCATTCAGTTTTCATGTTCGGTCCCTATGACGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGCTTGAGTAGCAGCTTCTTTCCTTTCATAGTGGCAGAGGAGGATGTTTTCTCAGAGATTCGTGTGCTTGAGCCTTTACTTGAACTAAGTGAAAACTGA 591 0.3959 MSGVYNAETSSLVVPLFKPWMEQFSSMLEIPVQSENPDDWSIRMEVLKCLNQFIQNFSSLIKSEFEAVWDDPCCDLTASLSKLLDVSDNTFWITGWVHFRVQSNGIHFQWSRLMCALEGNYLVCEDAHESIDQYSKELDKLQCIQFSCSVPMTNGRGFIEIEDQGLSSSFFPFIVAEEDVFSEIRVLEPLLELSEN* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4935 196 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 110 195 IPR044817 GO:0003677
Psa5g4935 196 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 67 104 IPR044817 GO:0003677
Psa5g4935 196 Coils Coil 124 144 - -
Psa5g4935 196 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 110 195 - -
Psa5g4935 196 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 67 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4935 Psa-Chr5 439198942 439199668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4935 64 194 SBP-box Gene Family AT2G47070 36.813 2.53e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4935 - - gmx:100809806 173.711