Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4925 ATGTCAAAGAAGAAGTCTAGTTTAGGAAGACAAAAAATTCCTATTGAAAAAATACTAAAAAAAAGTCATTTGCAAGTTACTTTTTCTAAACGGCGTTCAGGACTATTTAAAAAAGCTAGTGAACTTTGCACTCTTTGTGGTGTTGAGATTGCAATTGTAGTTTTCTCTCCGGCTGATAAGGCATTTTCTTTTGGTCATCCAGAAGTTGAGTCTATCGTTGATCGTTATTTGACTCGCAATCCTCCACCAGAATCTAGTGCTCACCAACTTGTCGAGGCTCATAGAAATGCTAATGTTCGTGATCTCAATATTCAATTGACTCAACTTCTTAACCATTTGGAGATTGAAAAGAAACAAGGGGAAGACATAGAACAAGTGAGGAAAGTTAGGCAAAGCCAATTTTGGTGGGAGAGTCCAATTGATGAGCTTGCCTTGCATGAATTGGTTCAATTAAAGGGATCTATTGAGGAGTTGAAGAAGAACATGAGAAAATTTGCTAACAAATGCATCATAGAACAATCTAATGCATCTTCGTCAAGCATGGGAGTTAATGAATTTGGATGTTATGATTCATTTGACAACAAATTTGGCCGCGGGATCAATATTGTTCCCACTCATCCTAATACATATTATCTTGGTTTTCGAAACGGGTATCTTTGA 660 0.3667 MSKKKSSLGRQKIPIEKILKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIVDRYLTRNPPPESSAHQLVEAHRNANVRDLNIQLTQLLNHLEIEKKQGEDIEQVRKVRQSQFWWESPIDELALHELVQLKGSIEELKKNMRKFANKCIIEQSNASSSSMGVNEFGCYDSFDNKFGRGINIVPTHPNTYYLGFRNGYL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4925 219 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Psa5g4925 219 Coils Coil 148 168 - -
Psa5g4925 219 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Psa5g4925 219 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Psa5g4925 219 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Psa5g4925 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 178 - -
Psa5g4925 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Psa5g4925 219 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Psa5g4925 219 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Psa5g4925 219 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Psa5g4925 219 PANTHER MADS BOX PROTEIN 7 178 - -
Psa5g4925 219 Coils Coil 99 119 - -
Psa5g4925 219 Gene3D - 89 182 - -
Psa5g4925 219 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4925 Psa-Chr5 438598021 438598680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4925 5 160 Type I MADS-box Gene Family AT5G60440 56.604 1.80e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g4925 SRF-TF 3.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4925 - - gmx:100793705 330.102