Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4920 ATGGTATCCGAATCCTCTAGCATTTCAGTCACTTCACAAGATCATGGTGATTCTTTCAATATAAAAAAAGTGGTGGATGTAAAAGAGAAAGAGAATGAACAAGATCAAAATTCAAACTTAGATTCCAAGGCACCTATTGATTTCATGAAGCTATTGAAAGAGGATTTGGTTGACGGATCAAAGATGCAAGAACACGGTTTTTTTAACCCTATTCAAGTTGGTTCATCGTCTATTCCTCCTAATATCGACAACGAAAAGAAAGACGAGAAAATCATTGAAGAGAAGAATTCGGAAACAAAGACATCTTATTCATGCAACTTTTGCCAAAGAGAATTTTCTACTTTACAAGCGTTAGGAGGACATCAGAACGCCCATAAGGCAGAACGCGCTTTAAAAAAGCAACGTGAGCAAAGGTACGACAACGATGTTTTAGGGTTAGGGAAAACTCACTTGAACCCTTATTTTCGTTACCCCAATGCTCTATTTTCATCGTATGGATCACTTGGGGTTAGAATGGAGTCAATGATTCAAAAACCATCATTTTTTAGCCCTAGGATCTCATCAAATAGTTTTGCTTATGGTCATGGTGGTTTGTGTTTGCAAGAGACATTAAACCCTTCTCTTTTTAGTTTGAGAAACAACATGGAAGGTAGTAGCAGGGTTAGAATTCTAGGTCTTGGTGGTGCAACTTCTTCTACGGTTGAAAATAATGTAAATAATAAAATTAATGCTTTTCTAAAATTTGGAGATTCTTCTAAAGATATTGCCACAAGTTCAAACTCAATCATAGACAATAATTTTTGTGTGGCTCCTACTTCTGTCAAAGACAACGTTCATCAACCAAAGTTCAACATTGAAGAAGAACCTTCCGATGAATCTTCTGGGCTTGATTTGACACTTAAGCTTTGA 909 0.3641 MVSESSSISVTSQDHGDSFNIKKVVDVKEKENEQDQNSNLDSKAPIDFMKLLKEDLVDGSKMQEHGFFNPIQVGSSSIPPNIDNEKKDEKIIEEKNSETKTSYSCNFCQREFSTLQALGGHQNAHKAERALKKQREQRYDNDVLGLGKTHLNPYFRYPNALFSSYGSLGVRMESMIQKPSFFSPRISSNSFAYGHGGLCLQETLNPSLFSLRNNMEGSSRVRILGLGGATSSTVENNVNNKINAFLKFGDSSKDIATSSNSIIDNNFCVAPTSVKDNVHQPKFNIEEEPSDESSGLDLTLKL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4920 302 Gene3D Classic Zinc Finger 81 145 - -
Psa5g4920 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Psa5g4920 302 Pfam C2H2-type zinc finger 103 127 - -
Psa5g4920 302 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 302 IPR044246 GO:0009788
Psa5g4920 302 PANTHER ZINC FINGER PROTEIN 3-LIKE 2 302 - -
Psa5g4920 302 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Psa5g4920 302 MobiDBLite consensus disorder prediction 283 302 - -
Psa5g4920 302 SUPERFAMILY beta-beta-alpha zinc fingers 100 131 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4920 Psa-Chr5 438122010 438123097 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4920 50 195 C2H2 Transcription Factor Family AT5G27880 31.073 2.90e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4920 - - mtr:MTR_3g011970 306.605