Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4919 ATGGTATCCGAATCCTCTAGCATCTCAATCACTTCACAAGATCATGGTGATTCTTTCAATATCATAAAAGTGGTGAATGAAAAGGAGAAGGAGAATGAACAAGATCAATCCTCAAACTCCGATTCAAAGGCATCTATTGATTTCATGAAGCTATTGAAAGAAGATTTGGTTGACGGATCAAAGGTGCAAGAGCACAATTATTTTAACCCTATTCAAGTTGGTTCATCGTCTATTCCTCCTAATACTGACAACGAAAAGAAAGACGAGAAAATCACTGAAGAGAAGAATTCGGAGTCAAAGACATCTTATTCATGCAGTTTTTGCCAAAGAAAATTTTCTACTTTACAAGCGCTAGGAGGACATCAGAATGCCCATAAGGCAGAACGCGCTTTAAAAAAACAACGTGAACAAAGGTACGACAACGATGTTTTAGGTTCAGGGCAAACTCACTTGAACCATTATTTTCGTTACCCTAGTCCTCTTTTGTCACCTTATGGATCACTTGGGGTTAGAATGGAGTCAATGATTCAAAAACCATCATTTTTTAGCCCTAGGATTTCATCAAATAATTTTGCTTCTAGTCACTATGGTTTGTGTTTGCCCGAGGCATTAAACCCTTCTCTTTTTAGTTTGAGAAACAACATGGAAGGTAGTAGCAGGGTTGGAATTCTAGGTCTTGGTGATGCAACTTCTTCTAGGGTTGAAAATGGTGTAAATAATAAAATTAGTACTTTTCTAAAATTTGGAGATTCTTCTAAAGATATTGCGAGAAGTTCAAACTCAATCGTAGACAACAATTTTTGTGTGGCTCCGGCTTCTATCAAAGATAACATTCATCAACCAAAGTTCAACATTGAAGAAGAAACTTCTGATGAATCTTCTGAGCTTGATTTGACACTTAAGCTTTGA 909 0.3674 MVSESSSISITSQDHGDSFNIIKVVNEKEKENEQDQSSNSDSKASIDFMKLLKEDLVDGSKVQEHNYFNPIQVGSSSIPPNTDNEKKDEKITEEKNSESKTSYSCSFCQRKFSTLQALGGHQNAHKAERALKKQREQRYDNDVLGSGQTHLNHYFRYPSPLLSPYGSLGVRMESMIQKPSFFSPRISSNNFASSHYGLCLPEALNPSLFSLRNNMEGSSRVGILGLGDATSSRVENGVNNKISTFLKFGDSSKDIARSSNSIVDNNFCVAPASIKDNIHQPKFNIEEETSDESSELDLTLKL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4919 302 PANTHER ZINC FINGER PROTEIN JAGGED 74 302 IPR045320 GO:0003700
Psa5g4919 302 SUPERFAMILY beta-beta-alpha zinc fingers 100 131 IPR036236 -
Psa5g4919 302 MobiDBLite consensus disorder prediction 68 96 - -
Psa5g4919 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Psa5g4919 302 MobiDBLite consensus disorder prediction 19 44 - -
Psa5g4919 302 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Psa5g4919 302 Gene3D Classic Zinc Finger 80 151 - -
Psa5g4919 302 PANTHER ZINC FINGER PROTEIN KNUCKLES 74 302 - -
Psa5g4919 302 MobiDBLite consensus disorder prediction 21 37 - -
Psa5g4919 302 Pfam C2H2-type zinc finger 103 127 - -
Psa5g4919 302 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4919 Psa-Chr5 438050898 438051806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4919 91 197 C2H2 Transcription Factor Family AT5G25160 36.937 8.18e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4919 - - mtr:MTR_3g011970 273.478