Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4857 ATGGAAGAAGATCAAGAAGTGATTAAACACGTTTGCAGAATCTGCTGCAAGAGTTTTCCATGTGGTAGATCATTAGGGGGTCACATGAGGTCACATGATCATGTGAAAACCAATGATCACCATCATGATGTTGATGATGATGAGAGTTTTGTTGTTGCTTCTGCTTCAACAGTGAAGAAAGAAGAAGGTTGTTCTGAAGGGTATTATGGTCTTAGAGAGAATCCAAAGAAAACTTGGAGAGTACTCACTGATTCAACTAGTGATGATCAAGAAGAAACTTTTGATGTTGTTTTGGACAAATTGTGCAAAGAATGTGGTAGAGGGTTTCAATCTTGGAAAGCTTTATTTGGTCACATGAAGTGTCATTCGAATAGTAAGAACAACGGTGTTGAATTGGATGAACAAGAGTCTAATACTGCTGATGCTTCTGTTCTTCCAAATAGAAAGAGAAGATCGAAAAGACGATTGAAAACAAGGTACTTAAATAGTAACAGTTCTACTTCTGTTGTGAATTTTGCTGCGAGTTCGGTTTCTGAGAAAGAAGAACATGAACAAGAAGAGGTTGCTATGAGTTTGATGATGCTTAGTAGAGATGTTAGGTCTTGGTGTGGTCTCAATTCTATTGCTGAATCTTCTGATAATGAAGATAGTAAAGGAAGTGATGGATTGAAGATGAAGAAAACAAGAGTTTCTGTTATTGAGAATGGAAAGGATATGAAGAAGAATAAGGTGGAGATTGAGGTTGATTCTGATTCAGCACTTGAGGTCGATGTAAGATCAAAACCAGGTACTAGTAGCACTAGTAAAGGCAAGTATACTTCAATGAAGGAAAAGTTTTATGATTGTGAAACTAAGGTTTCATCGGAAGTTGAAATCGGTGCGAAGAAATCTCGTAAGAGAGGAAAATTCGAGTGTGCTACTTGCAACAAGATTTTTCATTCATATCAAGCTCTTGGAGGTCATAGAGCTAGTCACAAGAGGAGCAAAGGATGTTTTGCTTCAAAGATTGATCAAAACAGTGACAATGAAAACAATGCTGAGTTGGAAATGGAAGTAGATACGAAGATCAATGTTGCTGATGAGGGAAGAATCTTAGAAAGTGAAGTCGTCGTCGAAGAAGTTTCGGAAATAAGGAACTTCCTTGATCTTAATCTTCCTGCTGATGCAAGTATTGTTGATGAAAGAAATGGCCATTCTGAGATTTACACACCATGGTGGTTAGATGGAAGTAACTTCAAGCAAGAGGCAATGGTAGGCCTACTATCAAACTAG 1272 0.3774 MEEDQEVIKHVCRICCKSFPCGRSLGGHMRSHDHVKTNDHHHDVDDDESFVVASASTVKKEEGCSEGYYGLRENPKKTWRVLTDSTSDDQEETFDVVLDKLCKECGRGFQSWKALFGHMKCHSNSKNNGVELDEQESNTADASVLPNRKRRSKRRLKTRYLNSNSSTSVVNFAASSVSEKEEHEQEEVAMSLMMLSRDVRSWCGLNSIAESSDNEDSKGSDGLKMKKTRVSVIENGKDMKKNKVEIEVDSDSALEVDVRSKPGTSSTSKGKYTSMKEKFYDCETKVSSEVEIGAKKSRKRGKFECATCNKIFHSYQALGGHRASHKRSKGCFASKIDQNSDNENNAELEMEVDTKINVADEGRILESEVVVEEVSEIRNFLDLNLPADASIVDERNGHSEIYTPWWLDGSNFKQEAMVGLLSN* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4857 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Psa5g4857 423 SUPERFAMILY beta-beta-alpha zinc fingers 101 325 IPR036236 -
Psa5g4857 423 ProSitePatterns Zinc finger C2H2 type domain signature. 305 325 IPR013087 -
Psa5g4857 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Psa5g4857 423 Pfam C2H2-type zinc finger 102 122 - -
Psa5g4857 423 Pfam C2H2-type zinc finger 10 32 - -
Psa5g4857 423 Pfam C2H2-type zinc finger 303 327 - -
Psa5g4857 423 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Psa5g4857 423 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 357 - -
Psa5g4857 423 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 368 423 - -
Psa5g4857 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 303 330 IPR013087 -
Psa5g4857 423 MobiDBLite consensus disorder prediction 132 157 - -
Psa5g4857 423 SMART c2h2final6 303 325 IPR013087 -
Psa5g4857 423 SMART c2h2final6 100 122 IPR013087 -
Psa5g4857 423 SMART c2h2final6 10 32 IPR013087 -
Psa5g4857 423 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Psa5g4857 423 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 357 - -
Psa5g4857 423 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 368 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4857 Psa-Chr5 433208806 433210980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4857 1 247 C2H2 Transcription Factor Family AT1G26610 37.594 1.66e-32 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g4857 zf-C2H2_6 5.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4857 - - cam:101495666 466.077