Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4842 ATGAGTAGCGTTTCGACGCCAAAACGGAAAGAGTCATTTTTATCGAGTGGAGGTGATGTTGGCAGAAGCCCAAAGCGTAGCCGGTCGGTATTACCGGTGGAAGAAGCTGATCAAAGAGGTAACGCGGAAGGAGGGGAAGGTATTATAATGAAAGATAGCCGGGCAGTATTATCGGGGGAGGAAGCTGATCAAAGAGATAACGCGGGAGGGGGAGAAGTTGCTCTAAAGAAAGGTCCATGGACAAAGGAAGAGGATGAAATTTTGGTAGATCATATTAAAAAGCATGGAGAGGGAAACTGGAATGCGGTCCAAAAGGAATCCGGACTTGCTCGCTGTGGGAAAAGCTGTCGTCTCCGGTGGTTTAATCACTTGAGGCCGGGACTGAAAAGGGGTCCATTTACTGCTGAAGAAGAACGCAAAATCCTCGAGTTCCACTTTCGGAAAGGAAGCAAGTGGGCTCAAATGGCTGCCTTGTTGCCTGGACGTACAGATAACGAGATAAAGAACTTTTGGTACGCAAGATCTAAGAAACGGCAACGAGCTGGCTTACCAATCTATCCTGAAGAGATAACATCAAAACCTGCAATAAATGGCAGTCAAGAAAGTGCTGAGGCATTGGCAAATGAATCCAGCCAGCAAGTTGAAACAGAAACCTTTAACTTGGATATAACTGACTTGGACCTTAAATATTACAAATTCAGCCCAGATATGTTGCCACCATTTTTTGATATTCAAGATTACAAACCAATAAGTGACTTGGTTGGACGGTACTCAGATCCGTCTCATAATACCTTATCCATGCCTAGTG 808 0.4493 MSSVSTPKRKESFLSSGGDVGRSPKRSRSVLPVEEADQRGNAEGGEGIIMKDSRAVLSGEEADQRDNAGGGEVALKKGPWTKEEDEILVDHIKKHGEGNWNAVQKESGLARCGKSCRLRWFNHLRPGLKRGPFTAEEERKILEFHFRKGSKWAQMAALLPGRTDNEIKNFWYARSKKRQRAGLPIYPEEITSKPAINGSQESAEALANESSQQVETETFNLDITDLDLKYYKFSPDMLPPFFDIQDYKPISDLVGRYSDPSHNTLSMPS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4842 269 Gene3D - 76 129 - -
Psa5g4842 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 128 IPR017930 -
Psa5g4842 269 SMART sant 76 126 IPR001005 -
Psa5g4842 269 SMART sant 129 177 IPR001005 -
Psa5g4842 269 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 63 246 - -
Psa5g4842 269 CDD SANT 79 124 IPR001005 -
Psa5g4842 269 ProSiteProfiles Myb-like domain profile. 125 171 IPR001005 -
Psa5g4842 269 MobiDBLite consensus disorder prediction 1 77 - -
Psa5g4842 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 179 IPR017930 -
Psa5g4842 269 SUPERFAMILY Homeodomain-like 75 171 IPR009057 -
Psa5g4842 269 Pfam Myb-like DNA-binding domain 77 124 IPR001005 -
Psa5g4842 269 Pfam Myb-like DNA-binding domain 130 172 IPR001005 -
Psa5g4842 269 ProSiteProfiles Myb-like domain profile. 72 124 IPR001005 -
Psa5g4842 269 Gene3D - 132 213 - -
Psa5g4842 269 CDD SANT 132 172 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4842 Psa-Chr5 430614995 430616222 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4842 74 269 MYB Transcription Factor Family AT5G06100 48.731 1.55e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g4842 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4842 K09422 - gmx:100800658 229.18