LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g4840	ATGGCTAGAGGCGTTATTCAGTCGTTATTGAGGAGGAAACTCCAATCTCATTCTCTTAATCCTTTGTTCGTGTCATCCATTATCACAAAGAATGATGGTGTTGGTTCTAGAAGCAGCAGATCCTTAAAAGCCCTTGCATTAATTGGAGCTGGAGTCTCAGAGTTATTAGGTTTTGCAACAACAACATCAGTTGATGAAGCCGAGCATGGTCTGGCTTCTCCAAGCTATCCATGTCCTCACGAGGGCATCCTCAGTTCATATGACCATGCTTCAATTCGTCATGGTCATCAAGTTTATACACAAGTTTGTGCTTCCTGTCATTTTATGTCTTTGATATCATACCATGATTTGCTTGGTGTTGCTTACACAGAAGGGGAAGTAAAGGCCATGGCTGCTGAGATTGAGGTGGAAGATGGCCCTAATGATGAGGATGAGATGTTCACACGTCCCGGTAAACTCAGTGATTGCTTTCCTCATCCATATGCAAATGAATCAGCTGTTAGGTTTGCTAATGGAGGAGCCTATCCTCCAGATCTAGGTCTTGTTACCGAAGCTCGTCACAATGGTCAGAACTATGTGTTTTCTCTTCTTACCGGTTATCATGACCCCCCTGTTGGTGTTGTGATTAGAGAAGGACTACACTATAACCCTCACCAACCGAGTTGCTTCCGATTCCTCCATTCTCACACCACCTCTTCAAGAAACTATGGCCATCGTTTCAACCATAAAACCGTGATTCCCTTTACAAACCAAGTCCAACAACATCAATGGCTCAGTCATCACCATGTGTTAACAATTCTAATTCGCAACAATTTTGTCAACGCAAAGCAACTTTGA	837	0.4313	MARGVIQSLLRRKLQSHSLNPLFVSSIITKNDGVGSRSSRSLKALALIGAGVSELLGFATTTSVDEAEHGLASPSYPCPHEGILSSYDHASIRHGHQVYTQVCASCHFMSLISYHDLLGVAYTEGEVKAMAAEIEVEDGPNDEDEMFTRPGKLSDCFPHPYANESAVRFANGGAYPPDLGLVTEARHNGQNYVFSLLTGYHDPPVGVVIREGLHYNPHQPSCFRFLHSHTTSSRNYGHRFNHKTVIPFTNQVQQHQWLSHHHVLTILIRNNFVNAKQL*	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g4840	278	Pfam	Cytochrome C1 family	80	220	IPR002326	GO:0009055\|GO:0020037
	Psa5g4840	278	Gene3D	-	67	263	IPR036909	GO:0009055\|GO:0020037
	Psa5g4840	278	PANTHER	CYTOCHROME C1	26	221	IPR002326	GO:0009055\|GO:0020037
	Psa5g4840	278	PANTHER	CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL	26	221	-	-
	Psa5g4840	278	SUPERFAMILY	Cytochrome c	71	217	IPR036909	GO:0009055\|GO:0020037
	Psa5g4840	278	PRINTS	Cytochrome C1 signature	76	95	IPR002326	GO:0009055\|GO:0020037
	Psa5g4840	278	PRINTS	Cytochrome C1 signature	96	115	IPR002326	GO:0009055\|GO:0020037
	Psa5g4840	278	PRINTS	Cytochrome C1 signature	141	161	IPR002326	GO:0009055\|GO:0020037
	Psa5g4840	278	PRINTS	Cytochrome C1 signature	174	198	IPR002326	GO:0009055\|GO:0020037
	Psa5g4840	278	PRINTS	Cytochrome C1 signature	212	223	IPR002326	GO:0009055\|GO:0020037

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g4840	Psa-Chr5	430587317	430588153	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g4840	4	220	Chloroplast and Mitochondria Gene Families	AT3G27240	72.811	2.50e-102	299

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g4840	K00413		-	gmx:100803087	349.747