Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4831 ATGGCAAGAACAAACGGTTGCAGTGGAACTCGTCCTTCTAATAAAAAGAAGGACAAGGAGTCAAAGAAAAGGTTGATTGATGGGAACAGAGATGTGGATCCTCAACTATGGCATGTTATTGCTGGAGGAATGGTTCAAATTCCAGAAGTTAACTCTAACATCTTCTACTTCCCTCAAGGTCATGCCGAACATGCATATCAACCTGTCCATTTTCCTGCTGCCTTCAAAATTCCATCACAAATTCCATGTAGAGTTGCAGCTATCCATTATAGGGATGATCCTCACACAGATGAAGTGTATGCAAAGCTCAGGCTTGTTCCTCTCCATGTTAGGGAAGTTAGTTTTGATGATGACGTTGTTGGTGGCATCGATAACATGTCCGAAACTAAGAATAAATATCAATCTTATACGAAAACATTGACACGATTTGATGCAAACAATGGTGGTGGATTCTCTTGTCCTAAGAAATGTGCAGAAACACCTTTTCCTCCATTAGACTATTCAGGTCAGCTTCCTACTCAGGACGTTTTTCCCATGGATGTGCATGGAGAAACATGGAGATTCAGTCATTCTTATAGGGGAATGCCGAAGCGGCATCTGTTAACCACTGGGTGGAGTGATTTTGTGACCGATAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTGTGATAGATGAACACATTGATCTTCATGTTGGAATAAGAAGACATACTTCCTCTTTTGGAGAGTTGAGAATAAGTGGTAAGGTGATGGGAATTGAGAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTCAAACTTTGTGTCAATATGAAACCGTTTGATGTGGTTTACTATCCTCGGGTTGGTACTCCCGAGTTTTTTGTGAAACCCTCTTCGATTAGAAAAGCACTTCAGGTTAGGTGGTGTTGTGGAATGAGGTTCAAGATGGCCATGGAAACTGAAGACTCACCAAGGACACATTGGTTTATGGGAACAATTGCTTCTGGTCAGGCTGTTGATCCAGCATGGCCTAACTCTCTTTGGAGACGTTTGCAGGTTACATGGGACCAACCTGATTTACTTACAAATACCAAGATGCCGGATCCGTGGGAAGTCGAAGTAGTATCGGACATGCCTCTGTTCCCTTTTCTCCCCTTCTTGCCATCAAGTAAGAAACTGAGATGGGATCAACAGCCAAGTTTCGCCATGGATGGCCAATTAGCAATGCCAACATTTGCAAACAATGAAACTCCAAATGTTGATAGTACTGCAGGCATACAGGGAGCCAGGCATGATGATTTTAGTTCCTCCAAATCATCCTTTCACCTTGAAAAAAATCCATTAGAACCCTTTATGTCTCATTTCTGA 1350 0.4222 MARTNGCSGTRPSNKKKDKESKKRLIDGNRDVDPQLWHVIAGGMVQIPEVNSNIFYFPQGHAEHAYQPVHFPAAFKIPSQIPCRVAAIHYRDDPHTDEVYAKLRLVPLHVREVSFDDDVVGGIDNMSETKNKYQSYTKTLTRFDANNGGGFSCPKKCAETPFPPLDYSGQLPTQDVFPMDVHGETWRFSHSYRGMPKRHLLTTGWSDFVTDKLLVSGDSLVFVIDEHIDLHVGIRRHTSSFGELRISGKVMGIEKVKAEDVIEAVKLCVNMKPFDVVYYPRVGTPEFFVKPSSIRKALQVRWCCGMRFKMAMETEDSPRTHWFMGTIASGQAVDPAWPNSLWRRLQVTWDQPDLLTNTKMPDPWEVEVVSDMPLFPFLPFLPSSKKLRWDQQPSFAMDGQLAMPTFANNETPNVDSTAGIQGARHDDFSSSKSSFHLEKNPLEPFMSHF* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4831 449 MobiDBLite consensus disorder prediction 12 27 - -
Psa5g4831 449 CDD B3_DNA 135 236 IPR003340 GO:0003677
Psa5g4831 449 Pfam Auxin response factor 265 346 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa5g4831 449 Pfam B3 DNA binding domain 137 237 IPR003340 GO:0003677
Psa5g4831 449 Gene3D - 134 238 IPR015300 -
Psa5g4831 449 MobiDBLite consensus disorder prediction 1 27 - -
Psa5g4831 449 Gene3D - 301 373 - -
Psa5g4831 449 SMART B3_2 136 238 IPR003340 GO:0003677
Psa5g4831 449 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 242 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa5g4831 449 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 245 441 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa5g4831 449 PANTHER AUXIN RESPONSE FACTOR 27 242 - -
Psa5g4831 449 PANTHER AUXIN RESPONSE FACTOR 245 441 - -
Psa5g4831 449 SUPERFAMILY DNA-binding pseudobarrel domain 132 238 IPR015300 -
Psa5g4831 449 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4831 Psa-Chr5 429668533 429670062 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4831 30 436 B3 DNA Binding Superfamily AT4G30080 46.389 5.44e-126 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa5g4831 B3 3.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4831 - - mtr:MTR_7g101280 524.628