Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4829 ATGGCAAGAACAAACGGTTGCAGTGGAACTCGCCCTTATAATAAAAAGAAGGATAAGGAGTTAAAGAAAATGTTGATTGATGGGAACAGAGATGTGGATCCTCAGCTATGGCATGTTGTTGCTGGAGGAATGGTTCAAATTCCAGAAGTTAACTCTAACATCTTTTACTTCCCTCAAGGTCATGCCGAACATGCATATCAACTTGTCCATTTTCCTGCTGCCTTCAAAAATCCATCCCAAATTCCATGTAGAGTTGCAGCTATCCATTATAGGGATGGTCCTCACACATATGAAGTGTATGCAAAACTCAGGCTTGTTCCTCTCCATGTTAGGGAAGTTAGTTTTGATGATGACGATGTTAGTGGCATCGATAACATGTTTGAAACTAAGAATAAATGTCAATCTTATATGAAAATATTGACACCATCTGATGCAAACAATGGTGGTGGATTCTCTTGTCCTAGGAAATTTGCAGAAACACGTTTTCCTCCATTAGACTATTCAGGTCAGCTTCCTACTCAGGAAGTTTTTCCCATGGATGTGCATGGAGAAACATGGAGATTCAGACATGCTTATAAGGGCATGCCGAAGCGGCATCTGTTAACAACTGGGTGGAGTAATTTTGTGACCGATAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTGTGAGAGATGAACACAATGATCTTCATGTTGGAATAAGAAGACTTACTTCCTCTTTTGGAGAGTGGAGAATAAGTGATAAGGTGATGGGAATTGGGAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTCAAACTTTGTGTCAATATGAAATCGTTTGATGTGGTTTACTATCCTCGGGTTGGTACTCCCGAGTTTTTTGTGAAACCCTATTTGATTAGAAAAGCACTTCAGGTTAGGTGGTGTTGTGGAATGAGGTTCAAGATGGCCATGGAAACCGAAGACTCGTCAAGGGCACATTGGTTTATGGGAACAATTACTTCTGTTCAGGCTGCTGATCCAGCATGGCCTGACTGTCTTTAG 1026 0.4113 MARTNGCSGTRPYNKKKDKELKKMLIDGNRDVDPQLWHVVAGGMVQIPEVNSNIFYFPQGHAEHAYQLVHFPAAFKNPSQIPCRVAAIHYRDGPHTYEVYAKLRLVPLHVREVSFDDDDVSGIDNMFETKNKCQSYMKILTPSDANNGGGFSCPRKFAETRFPPLDYSGQLPTQEVFPMDVHGETWRFRHAYKGMPKRHLLTTGWSNFVTDKLLVSGDSLVFVRDEHNDLHVGIRRLTSSFGEWRISDKVMGIGKVKAEDVIEAVKLCVNMKSFDVVYYPRVGTPEFFVKPYLIRKALQVRWCCGMRFKMAMETEDSSRAHWFMGTITSVQAADPAWPDCL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4829 341 Pfam B3 DNA binding domain 137 236 IPR003340 GO:0003677
Psa5g4829 341 CDD B3_DNA 135 236 IPR003340 GO:0003677
Psa5g4829 341 SMART B3_2 136 238 IPR003340 GO:0003677
Psa5g4829 341 Pfam Auxin response factor 265 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa5g4829 341 Gene3D - 298 341 - -
Psa5g4829 341 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
Psa5g4829 341 Gene3D - 133 237 IPR015300 -
Psa5g4829 341 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 247 339 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa5g4829 341 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 242 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa5g4829 341 PANTHER AUXIN RESPONSE FACTOR 27 242 - -
Psa5g4829 341 PANTHER AUXIN RESPONSE FACTOR 247 339 - -
Psa5g4829 341 SUPERFAMILY DNA-binding pseudobarrel domain 132 238 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4829 Psa-Chr5 429664488 429665581 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4829 30 339 B3 DNA Binding Superfamily AT4G30080 47.977 6.96e-102 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa5g4829 B3 1.2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4829 - - mtr:MTR_7g101280 417.927