LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g4829	ATGGCAAGAACAAACGGTTGCAGTGGAACTCGCCCTTATAATAAAAAGAAGGATAAGGAGTTAAAGAAAATGTTGATTGATGGGAACAGAGATGTGGATCCTCAGCTATGGCATGTTGTTGCTGGAGGAATGGTTCAAATTCCAGAAGTTAACTCTAACATCTTTTACTTCCCTCAAGGTCATGCCGAACATGCATATCAACTTGTCCATTTTCCTGCTGCCTTCAAAAATCCATCCCAAATTCCATGTAGAGTTGCAGCTATCCATTATAGGGATGGTCCTCACACATATGAAGTGTATGCAAAACTCAGGCTTGTTCCTCTCCATGTTAGGGAAGTTAGTTTTGATGATGACGATGTTAGTGGCATCGATAACATGTTTGAAACTAAGAATAAATGTCAATCTTATATGAAAATATTGACACCATCTGATGCAAACAATGGTGGTGGATTCTCTTGTCCTAGGAAATTTGCAGAAACACGTTTTCCTCCATTAGACTATTCAGGTCAGCTTCCTACTCAGGAAGTTTTTCCCATGGATGTGCATGGAGAAACATGGAGATTCAGACATGCTTATAAGGGCATGCCGAAGCGGCATCTGTTAACAACTGGGTGGAGTAATTTTGTGACCGATAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTGTGAGAGATGAACACAATGATCTTCATGTTGGAATAAGAAGACTTACTTCCTCTTTTGGAGAGTGGAGAATAAGTGATAAGGTGATGGGAATTGGGAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTCAAACTTTGTGTCAATATGAAATCGTTTGATGTGGTTTACTATCCTCGGGTTGGTACTCCCGAGTTTTTTGTGAAACCCTATTTGATTAGAAAAGCACTTCAGGTTAGGTGGTGTTGTGGAATGAGGTTCAAGATGGCCATGGAAACCGAAGACTCGTCAAGGGCACATTGGTTTATGGGAACAATTACTTCTGTTCAGGCTGCTGATCCAGCATGGCCTGACTGTCTTTAG	1026	0.4113	MARTNGCSGTRPYNKKKDKELKKMLIDGNRDVDPQLWHVVAGGMVQIPEVNSNIFYFPQGHAEHAYQLVHFPAAFKNPSQIPCRVAAIHYRDGPHTYEVYAKLRLVPLHVREVSFDDDDVSGIDNMFETKNKCQSYMKILTPSDANNGGGFSCPRKFAETRFPPLDYSGQLPTQEVFPMDVHGETWRFRHAYKGMPKRHLLTTGWSNFVTDKLLVSGDSLVFVRDEHNDLHVGIRRLTSSFGEWRISDKVMGIGKVKAEDVIEAVKLCVNMKSFDVVYYPRVGTPEFFVKPYLIRKALQVRWCCGMRFKMAMETEDSSRAHWFMGTITSVQAADPAWPDCL*	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g4829	341	Pfam	B3 DNA binding domain	137	236	IPR003340	GO:0003677
	Psa5g4829	341	CDD	B3_DNA	135	236	IPR003340	GO:0003677
	Psa5g4829	341	SMART	B3_2	136	238	IPR003340	GO:0003677
	Psa5g4829	341	Pfam	Auxin response factor	265	338	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Psa5g4829	341	Gene3D	-	298	341	-	-
	Psa5g4829	341	ProSiteProfiles	B3 DNA-binding domain profile.	136	238	IPR003340	GO:0003677
	Psa5g4829	341	Gene3D	-	133	237	IPR015300	-
	Psa5g4829	341	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	247	339	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Psa5g4829	341	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	27	242	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Psa5g4829	341	PANTHER	AUXIN RESPONSE FACTOR	27	242	-	-
	Psa5g4829	341	PANTHER	AUXIN RESPONSE FACTOR	247	339	-	-
	Psa5g4829	341	SUPERFAMILY	DNA-binding pseudobarrel domain	132	238	IPR015300	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g4829	Psa-Chr5	429664488	429665581	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g4829	30	339	B3 DNA Binding Superfamily	AT4G30080	47.977	6.96e-102	312

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Psa5g4829		B3	1.2e-18	CL0405