Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4819 ATGAAAGATAGCCGGGCAGTATTATCGGGGGAGGAAGCTGATCAAAGAGATAACGCGGGAGGGGGAGAAGTTGCTCTAAAGAAAGGTCCATGGACAAAGGAAGAGGATGAAATTTTGGTAGATCATATTAAAAAGCATGGAGAGGGAAACTGGAATGCGGTCCAAAAGGAATCCGGAATTGCTCGCTGTGGGAAAAGCTGTCGTCTCCGGTGGTTTAATCACTTGAGGCCGGGACTGAAAAGGGGTCCATTTACTGCTGAAGAAGAACGCAAAATCCTCGAGTTCCACTTTCGGAAAGGAAGCAAGTGGGCTCAAATGGCTGCCTTGTTGCCTGGACGTACAGATAACGAGATAAAGAACTTTTGGTACGCAAGATCTAAGAAACGGCAACGAGCTGGCTTACCAATCTATCCTGAAGAGATAACATCAAAACCTGCAATAAATGGCAGTCAAGAAAGTGCTGAGGCATTGGCAAATGAATCCAGCCAGCAAGTTGAAACAGAAACCTTTAACTTGGATATAACTGACTTGGACCTTAAATATTACAAATTCAGCCCAGATATGTTGCCACCATTTTTTGATATTCAAGATTACAAACCAATAAGTGACTTGGTTGGACGGTACTCAGATCCGTCTCATAATACCTTATCCATGCCTAGTGCAGTAGTGCAGCGCAGATATTTGTTCAGTGGCAGTAGTGCTGTTGACCCGGAAGTATTTGATGAGTATAGCCAATATGCTATGTTGTCTACTCCATGTGATCCGATTCTTGACACCAACCTTGTTCATGGATATGATAATCCTATACCTGGTTTTCATGACGCGTCAAATATCTCTTATCCTGAGCCCATATATGGGTCCATGAGGTTTGAGCCCCCTTCATTCCAAAATTTACCGCAACAGTGTAACTGGCCGCAACTTCCCTCATTAGAGTATGTTGACATGTCGGTTCCGTGTCCTCCGATTGACCCTGTTGACAAGTCGGTTCCGTCTCCTCCGATTGACCCTTGTCCGTCCGTTCCAGATTATCCGGATTGCAATCATTTTATTGATTCAATAGTAAACTTCAATTCAGATCAAAATTTGAAAGACTCAAATATTGATTCATTGCAAACAAACACGGATAACAAGGCTCCCAATGAAGCAGACACTAGTACAAAATGGAATAGACTAGATTATGATCAGCACACTGCTATAGTTACTCTAGATTATGATCAGCACACTGATATAGTTAGTCGCCAAATAAACTTCTTAAAACGGGTCCGCTCAAAAATTAAAAACCGTGGATCATTCAAACGGCTTCCAGCTTATTATACTTCCAACAACGAATATAATTTGTATTGA 1344 0.4219 MKDSRAVLSGEEADQRDNAGGGEVALKKGPWTKEEDEILVDHIKKHGEGNWNAVQKESGIARCGKSCRLRWFNHLRPGLKRGPFTAEEERKILEFHFRKGSKWAQMAALLPGRTDNEIKNFWYARSKKRQRAGLPIYPEEITSKPAINGSQESAEALANESSQQVETETFNLDITDLDLKYYKFSPDMLPPFFDIQDYKPISDLVGRYSDPSHNTLSMPSAVVQRRYLFSGSSAVDPEVFDEYSQYAMLSTPCDPILDTNLVHGYDNPIPGFHDASNISYPEPIYGSMRFEPPSFQNLPQQCNWPQLPSLEYVDMSVPCPPIDPVDKSVPSPPIDPCPSVPDYPDCNHFIDSIVNFNSDQNLKDSNIDSLQTNTDNKAPNEADTSTKWNRLDYDQHTAIVTLDYDQHTDIVSRQINFLKRVRSKIKNRGSFKRLPAYYTSNNEYNLY* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4819 447 MobiDBLite consensus disorder prediction 1 30 - -
Psa5g4819 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 130 IPR017930 -
Psa5g4819 447 SUPERFAMILY Homeodomain-like 26 122 IPR009057 -
Psa5g4819 447 Gene3D - 27 80 - -
Psa5g4819 447 Gene3D - 83 161 - -
Psa5g4819 447 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 14 353 - -
Psa5g4819 447 CDD SANT 83 123 IPR001005 -
Psa5g4819 447 ProSiteProfiles Myb-like domain profile. 76 122 IPR001005 -
Psa5g4819 447 MobiDBLite consensus disorder prediction 1 18 - -
Psa5g4819 447 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Psa5g4819 447 SMART sant 27 77 IPR001005 -
Psa5g4819 447 SMART sant 80 128 IPR001005 -
Psa5g4819 447 Pfam Myb-like DNA-binding domain 81 123 IPR001005 -
Psa5g4819 447 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Psa5g4819 447 CDD SANT 30 75 IPR001005 -
Psa5g4819 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 79 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4819 Psa-Chr5 428219091 428220708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4819 25 333 MYB Transcription Factor Family AT5G06100 39.275 2.38e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g4819 Myb_DNA-binding 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4819 K09422 - gmx:100800658 276.174