Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4793 ATGGAAGCCGCAGTTATCGACGCCGGTTCCAGTCTCCTCAAAGCCGGTTTCGCAATTCCCGATCAAACTCCCGCCATGATTATTCCTAGTCAGATGAAACGAATGGTTGATGATAAAGGATCAGTTGGTGATAATGGTAATGGTCAGTTAGTGGTGGATGATGTTGCGGTGGAGCCGGTGGTGAGAGGTTATGTTAGAGATTGGGATGCTATGGAGGATTTGTTGAATTATGTTTTGTATTCTGGTCTTGGATGGGAAATTGGAAATGAAGGTCAAATTCTGTTTACGGATCCACTTTGTACCCCTAAGGCTAACAAAGAACAGTTAGTGCAACTGATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCGGAGCAGGCAGTGTTGTCACTCTATGCTGTGGGAAGGATCTCTGGATGCACGGTTGATATTGGTCATGGAAAAATAGATATTGCTCCAGTTATTGAGGGTGCTGTCAACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTACTGATCTAACTAATTTTCTGGCTCAAGAACTAGGCAAGTCCAATCCGCAAGTGAATATCAGTGTGTCTGATGTTGAGAAAATCAAACAGCTATACTCATGTTGTGCTGAAGATGACTACGCTTATCTGAAGACGAAAGATTATTGTCCTGTGGAGACACATACCCTTCCTGATGGACAGGTGATAACAATTGGAAGAGAAAGATATACAGTTGGTGAAGCTTTATTCCAGCCAAGTCTATTGGGTTTAGAGGCTCATGGCATTGTAGAGCAGCTTGTGCGTACTATTTCAACAGTGACATCTGATAATCATAGGCAACTTCTGGAAAATACTGTAGTTTGTGGTGGCACTTCTTCTATGACTGGTTTTGAAGAGAGATTTCAGAAGGAATCTTTGCTAAGTTCATCTGCTGTTCGACCTACCTTGGTTAAGCCTCCAGAATATATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGCGCTATACTCGCCAAAGTAGTTTTTCCTCAAAATCAGCATGTAACTAAGGCAGATTATGATGAAAATGGACCTTCCATTGTTCACCGGAAATGCTTCTGA 1101 0.4223 MEAAVIDAGSSLLKAGFAIPDQTPAMIIPSQMKRMVDDKGSVGDNGNGQLVVDDVAVEPVVRGYVRDWDAMEDLLNYVLYSGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGTDLTNFLAQELGKSNPQVNISVSDVEKIKQLYSCCAEDDYAYLKTKDYCPVETHTLPDGQVITIGRERYTVGEALFQPSLLGLEAHGIVEQLVRTISTVTSDNHRQLLENTVVCGGTSSMTGFEERFQKESLLSSSAVRPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHVTKADYDENGPSIVHRKCF* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4793 366 Pfam Actin 2 366 IPR004000 -
Psa5g4793 366 Coils Coil 366 366 - -
Psa5g4793 366 Gene3D Actin; Chain A, domain 4 170 257 - -
Psa5g4793 366 PRINTS Actin signature 23 32 IPR004000 -
Psa5g4793 366 PRINTS Actin signature 105 118 IPR004000 -
Psa5g4793 366 PRINTS Actin signature 130 149 IPR004000 -
Psa5g4793 366 PRINTS Actin signature 222 238 IPR004000 -
Psa5g4793 366 SUPERFAMILY Actin-like ATPase domain 136 366 IPR043129 -
Psa5g4793 366 Gene3D - 5 360 - -
Psa5g4793 366 PANTHER ACTIN 1 365 IPR004000 -
Psa5g4793 366 PANTHER BNACNNG31150D PROTEIN 1 365 - -
Psa5g4793 366 Gene3D - 128 329 - -
Psa5g4793 366 SUPERFAMILY Actin-like ATPase domain 2 143 IPR043129 -
Psa5g4793 366 SMART actin_3 1 366 IPR004000 -
Psa5g4793 366 CDD NBD_sugar-kinase_HSP70_actin 4 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4793 Psa-Chr5 426380393 426388350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4793 1 366 Cytoskeleton Gene Families AT3G12110 36.842 8.00e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4793 K16615 - gmx:100794153 657.907