Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4787 ATGAGTAGTACTTCAAAGCAAAACCGGGGTGATGGTTGCAAAAGGGCAAAGCGTAGCCGGTCATTATTGCCAGAGGAAGAAGCTGATCAAAGAGGTAACACGGGAGGAGGAGAAGATACTTTAAAGAAAGATAGCGAAGCGGATCAAAGAGTTAACGTGGATGGAGGAGAAGTTACTCTAAAGAAAGGTCCGTGGACAAAGAAAGAGGATGAAATTTTGGTAGATCATATTAAAAAGCATGGAGAGGGAAACTGGAATGCGGTCCAAAAGGAATCCGGACTTGCTCGCTGTGGGAAAAGCTGTCGTCTCCGATGGTTTAATCACTTGAGGCCAGGACTGAAAAAGGGTTCGTTTACTGCTGAAGAAGAACGCCTAATCTTTGAGTACCACTTTCTGAAGGGAAGCAAGTGGGCTCATATGGCTGCATTGTTGCCTGGACGTACGGATAACGAGATAAAGAACTTTTGGTACACAAGATCTAAGAAACGGCAACGAGCAGGCTTACCGATCTATCCTAACGAGATAACATCCAAATATTCGTTTAATGGCAGTCAAGAAAGTGCTGACATATTGGCAAATGAATCCAGCCAGAATATGTTGCCACCGTTTTTTGATTCACAAGATGCATGGATAAGGCACAGATATTTGATCAGTAGCAGTAGTGCTTCTGTCCCGGAAGTATTTGATCAGTATGGCCAATATCCTATGTTGTCTACTCCATTTGATCCGATTCTTGACACCAACCTTCTTCATGGATATGATAATCCTATACCCGGTTTTCATGCCGCGTCAAATATCTCTTCTTCTGAGCCCATATATGGGTCCATGAGTTTTGAGCTCCCTTCATTCCAAAGTTCACCGACTCAACAGTGTACCTGGAGCGGCATGTATGTGTCGCCACTTCCCTCATTTGAGTCTGTTGACACGCCGGTTCAGGCTCCTCCGATTGAGTCTTGTCTGTCCGTTCCAGTTCCAGTTCCAGATTCTCCGGATTGGAGTCATTTAATTGATCCAATAGTATACTACAATTCAGATCAAAATTTAGAAGGCACGAGTATTGACTCATTGCAAGCAAATACTGAGAGCATGGCTCCCAATGAGGCAGACATTAGTACACAATGGAATGGACTAGATTATGATCAATGCCCTGCTTTAAGTACTCGCCAAATAAACATCTCAAGATGGTTCCACTCAGAAATTGAAACCTCTCTGGATGATATTTACGGTGATGCGTTTAATGATCAGCTTCCGGCTGATTCTTCTTTTGACAAAGAAGATAATTTGAATCAGAAAGGTTTGGCGCTACCAAATGCCGTGCTCGACTCTGGCTGA 1332 0.4354 MSSTSKQNRGDGCKRAKRSRSLLPEEEADQRGNTGGGEDTLKKDSEADQRVNVDGGEVTLKKGPWTKKEDEILVDHIKKHGEGNWNAVQKESGLARCGKSCRLRWFNHLRPGLKKGSFTAEEERLIFEYHFLKGSKWAHMAALLPGRTDNEIKNFWYTRSKKRQRAGLPIYPNEITSKYSFNGSQESADILANESSQNMLPPFFDSQDAWIRHRYLISSSSASVPEVFDQYGQYPMLSTPFDPILDTNLLHGYDNPIPGFHAASNISSSEPIYGSMSFELPSFQSSPTQQCTWSGMYVSPLPSFESVDTPVQAPPIESCLSVPVPVPDSPDWSHLIDPIVYYNSDQNLEGTSIDSLQANTESMAPNEADISTQWNGLDYDQCPALSTRQINISRWFHSEIETSLDDIYGDAFNDQLPADSSFDKEDNLNQKGLALPNAVLDSG* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4787 443 CDD SANT 64 109 IPR001005 -
Psa5g4787 443 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 46 321 - -
Psa5g4787 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 164 IPR017930 -
Psa5g4787 443 CDD SANT 117 158 IPR001005 -
Psa5g4787 443 Gene3D - 61 114 - -
Psa5g4787 443 ProSiteProfiles Myb-like domain profile. 110 160 IPR001005 -
Psa5g4787 443 MobiDBLite consensus disorder prediction 1 58 - -
Psa5g4787 443 ProSiteProfiles Myb-like domain profile. 57 109 IPR001005 -
Psa5g4787 443 Gene3D - 117 163 - -
Psa5g4787 443 SUPERFAMILY Homeodomain-like 60 156 IPR009057 -
Psa5g4787 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 113 IPR017930 -
Psa5g4787 443 SMART sant 61 111 IPR001005 -
Psa5g4787 443 SMART sant 114 162 IPR001005 -
Psa5g4787 443 MobiDBLite consensus disorder prediction 10 51 - -
Psa5g4787 443 Pfam Myb-like DNA-binding domain 115 158 IPR001005 -
Psa5g4787 443 Pfam Myb-like DNA-binding domain 62 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4787 Psa-Chr5 426051170 426053171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4787 55 175 MYB Transcription Factor Family AT3G11440 71.901 3.07e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g4787 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4787 K09422 - gmx:100818609 265.388