Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4783 ATGGATGAATATTATTGTACCGCACATCCTTCAATCGATTGTGATGCATTATGCGACAATGACCCGTATCTTAATATAGAATTCAATTACACGATTATCAGTGTTCCAAGTGATAAAATGTTGCCATCTTTGAGTGAAACCAAAAGTTACGTTCTTTGTTATGAGTCAAAAGATAAAGAAATCCAAAAAGCTATCATTCTAGCATGGCTTTCTGAAATAGATGTTCCTGAAGATGCTTTTACTATGGTGCTACAAGAAATTTCGCAATGTGTACGTGAGATGGTTGATGGGATATATAAGAACTCGAAAGATCTTTCTATTCGAGTTGATTTTTCTGTTACACGGAATATTAAAGAGGGTAATGAAGATGAAGGTGACGTGGAAATGGAGGTAGAAGAAGACAAAGATAATGAATCAAGAAGGTCTACTGAAGATTATCGTCATGGAAATGATTATGGAGATTCATGGAGTTCGAATAGGGAAGAGGATATGGGAATTGAAGATGGTAGTATATTCGTTCTTGACGTTGCAAGTGATGAAGATGAATGGGAGTATGGTTGGGAAGAGGGAATAGAGATGGAACAAGATATTAGATTTGTTCCTGCGGCTAAATCGTGTATTGAGGGATTGAAGATGGTGACAGTTGAAGAGGCGGAAAAATGTAGTATTTGTTTCGAAGATTTTAAGGTTGGTGTCTGTCTGTCATGTTCGCATATGTTTCATAAGGATTGTATTCAAGATTGGTTGAATGTAGGCAATTCTTGTCCCTTGTGTAGGTTTCAATTGCCTACTAATAGTAATAACACAAGTGAATAA 816 0.3627 MDEYYCTAHPSIDCDALCDNDPYLNIEFNYTIISVPSDKMLPSLSETKSYVLCYESKDKEIQKAIILAWLSEIDVPEDAFTMVLQEISQCVREMVDGIYKNSKDLSIRVDFSVTRNIKEGNEDEGDVEMEVEEDKDNESRRSTEDYRHGNDYGDSWSSNREEDMGIEDGSIFVLDVASDEDEWEYGWEEGIEMEQDIRFVPAAKSCIEGLKMVTVEEAEKCSICFEDFKVGVCLSCSHMFHKDCIQDWLNVGNSCPLCRFQLPTNSNNTSE* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4783 271 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 104 268 - -
Psa5g4783 271 MobiDBLite consensus disorder prediction 134 160 - -
Psa5g4783 271 Pfam Ring finger domain 220 259 IPR001841 -
Psa5g4783 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 270 IPR013083 -
Psa5g4783 271 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CIP8-LIKE ISOFORM X1 104 268 - -
Psa5g4783 271 SUPERFAMILY RING/U-box 220 265 - -
Psa5g4783 271 SMART ring_2 221 258 IPR001841 -
Psa5g4783 271 ProSiteProfiles Zinc finger RING-type profile. 221 259 IPR001841 -
Psa5g4783 271 MobiDBLite consensus disorder prediction 120 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4783 Psa-Chr5 425847136 425848309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4783 201 262 C3H Transcription Factor Family AT1G68180 40.000 4.28e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4783 - - mtr:MTR_5g062820 177.948