Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4782 ATGGATGAATATTATTGTACCGCACATCCTTCAATCGATTGTGATGCATTATGCGACAATGACCCGTATCTTAATATAGAATTCAATTACACCATTATCAGTGTTCCAAGTGATAAAATGGTGCCATCTTTAAGTGAAACCAAAAGTTACGTTCTTTGTTATGTGTCAAAAGATAAAGAGATCCAAAAAGCTATCATTCTAGCATGGCTTTCTGAAATAGATGTTCCTGAAGATGCTTTTACCATGGTGCTAAAAGAAATTTCGCAATGTGTAAGTGAGATGATTGATGGGATATATAAGAACTCGAAAGATCTTTCTATTCGAGTTGATTTTTCTGTTACACGGAATATTAAAGAGGGTGATGAAGATGAAGGTCACGAGGAAATGGAGGTTGAAGAAGATGAAGATAATGAATCAAGAAGGTCTACTGAAGATTATCGTCGTGGAAATGATTATGGAGATTCATGGAGTTCGAATAGGGAAGAGGATATGGGAATTGAAGATGGTAGTATATTCGTTCTTGACGTTGCAAGTGATGAAGATGAATGGGAGTATGGTTGGGAAGAGGGAATAGAGATGGAACAAGATATTAGATTTATTCCTGCGGCTAAATCGTGTATTGAGGGATTGAAGATGGTGACAGTTGAAGAGGCGGAAAAATGTAGTATTTGTTTCGAAGATTTTAAGGTTGGTGTCTGTCTGTCATGTTCGCATATGTTTCATAAGGATTGTATTCAAGATTGGTTGAACATAGGCAATTCTTGTCCCTTGTGTAGGTTTCAATTGCCTACTACTAATAGTAATGACACAAATGAATAA 819 0.3626 MDEYYCTAHPSIDCDALCDNDPYLNIEFNYTIISVPSDKMVPSLSETKSYVLCYVSKDKEIQKAIILAWLSEIDVPEDAFTMVLKEISQCVSEMIDGIYKNSKDLSIRVDFSVTRNIKEGDEDEGHEEMEVEEDEDNESRRSTEDYRRGNDYGDSWSSNREEDMGIEDGSIFVLDVASDEDEWEYGWEEGIEMEQDIRFIPAAKSCIEGLKMVTVEEAEKCSICFEDFKVGVCLSCSHMFHKDCIQDWLNIGNSCPLCRFQLPTTNSNDTNE* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4782 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 272 IPR013083 -
Psa5g4782 272 SUPERFAMILY RING/U-box 220 264 - -
Psa5g4782 272 MobiDBLite consensus disorder prediction 118 160 - -
Psa5g4782 272 Pfam Ring finger domain 220 259 IPR001841 -
Psa5g4782 272 ProSiteProfiles Zinc finger RING-type profile. 221 259 IPR001841 -
Psa5g4782 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 104 268 - -
Psa5g4782 272 SMART ring_2 221 258 IPR001841 -
Psa5g4782 272 MobiDBLite consensus disorder prediction 140 160 - -
Psa5g4782 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CIP8-LIKE ISOFORM X1 104 268 - -
Psa5g4782 272 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4782 Psa-Chr5 425818752 425819797 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4782 221 265 C3H Transcription Factor Family AT3G60080 58.333 2.37e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4782 - K11982 cam:101499491 170.629