Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4781 ATGGATGAATATTCTTGTACCGCACATCCTTCAATCGATTGTGTTGCATTATGCGACAATGACCCGTATCTTAATATAGAATTCGATTACACCATTATTAGTGTTCCAAGTGATAAAATGTTGCCATCTTTAAGTGAAACCAAAAGTTACGTTCTTTGTTATGAGTCAAAAGATAAAGAAATCCAAAAAGCTATCATTCTAGCATGGCTTTCTGAAATAGATGTTCCTGAAGATGCTTTTACCATGGTGCTAAAAGAAATTTCGCAATGCGTACGTGAGGTGGTTGATGGGATATATAAGAACTCGAAAGATCTTTCTATTCAAGTTGATTTTTCTGTTACACAGAATATTAAAGAGGGTGATGAAGATGAAGATAAAGATGAAGAGGAATTGGATATTGAAGATCTTTGGAGCTATAATTGGGAAGAGGATATGGGAATTGAAGATGGTAATATATTCGTTCTTGCAGATGAATGGGAGTATGGTTGGGAAGAGGGGATAGAGATTGAAGAAGATATTAGGTTTGTTCCTGCGGCTAAATCGTGTATTGAGGGATTGAAGATGGTGACAGTTGAAGAGGCGGAAAAATGTAGTATTTGTTTTGAAGATTTTAAGGTTGGTGTCTGTATGCCATGTTCGCATATGTTTCATAAGGATTGTATTCAAGATTGGTTGAATGTAGGCAATTCTTGTCCTTTGTGTAGGTTTCAATTGCCTACTAATAGTAATAACACAAGTGAATAA 744 0.3548 MDEYSCTAHPSIDCVALCDNDPYLNIEFDYTIISVPSDKMLPSLSETKSYVLCYESKDKEIQKAIILAWLSEIDVPEDAFTMVLKEISQCVREVVDGIYKNSKDLSIQVDFSVTQNIKEGDEDEDKDEEELDIEDLWSYNWEEDMGIEDGNIFVLADEWEYGWEEGIEIEEDIRFVPAAKSCIEGLKMVTVEEAEKCSICFEDFKVGVCMPCSHMFHKDCIQDWLNVGNSCPLCRFQLPTNSNNTSE* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4781 247 SUPERFAMILY RING/U-box 196 241 - -
Psa5g4781 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 246 IPR013083 -
Psa5g4781 247 PANTHER F6A14.12 PROTEIN-RELATED 74 240 - -
Psa5g4781 247 Pfam Ring finger domain 196 235 IPR001841 -
Psa5g4781 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 74 240 - -
Psa5g4781 247 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Psa5g4781 247 SMART ring_2 197 234 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4781 Psa-Chr5 425635731 425636678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4781 197 242 C3H Transcription Factor Family AT3G60080 55.102 1.04e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4781 - K11982 mtr:MTR_5g062820 186.037