Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4766 ATGGCAGTAGCGCGAGAATTTTCCGCAGCGTTGTTCTCTTGCTCAAAGCCTCACGCTTCTCTTTTTCAACGTCTCTTCATTCGTAAAAAGACTTCCAAGATTTTTGTTAAAGGTTTAGCATTTTCTACTACAGAAGAGAAATTAGCTGAAGCTTTTTCTCAATACGGAAATGTTCTCAAAGCTGATATAGTGTTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTTCAGAGGAGGAAGAAGCCCGCAAAGCACAGATCGACATGAATGGAAAGATATTACACGGACGTGTCTTATACGTAGACATGGATCCACCTGACGAGCAAAAGAAAACTTACAAGCACGCAATTAAAAATACACATGCTGATAATGATGATGTGCATATGGATTGA 405 0.3877 MAVAREFSAALFSCSKPHASLFQRLFIRKKTSKIFVKGLAFSTTEEKLAEAFSQYGNVLKADIVLNKAKNRSKGFGYVTFSEEEEARKAQIDMNGKILHGRVLYVDMDPPDEQKKTYKHAIKNTHADNDDVHMD* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4766 134 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 103 IPR000504 GO:0003723
Psa5g4766 134 PANTHER TRANSFORMER-2-RELATED 24 112 - -
Psa5g4766 134 Gene3D - 24 130 IPR012677 -
Psa5g4766 134 SUPERFAMILY RNA-binding domain, RBD 30 114 IPR035979 GO:0003676
Psa5g4766 134 PANTHER RNA RECOGNITION MOTIF 24 112 - -
Psa5g4766 134 SMART rrm1_1 33 106 IPR000504 GO:0003723
Psa5g4766 134 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4766 Psa-Chr5 424888518 424892750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4766 26 121 Eukaryotic Initiation Factors Gene Family AT1G22760 35.417 6.62e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4766 - K13195 gmx:100527061 159.458