Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4765 ATGTGCAGTGGTCCTGACAAATCAAAATCTCGTTCAACTTGTTCATCTTCATCTGCGGAAGAAGGTTCAAATAACATCAAAGACATGAAAAACCTAACAGTTCATACCGATGATTCTTTTTCCAGCTTGCTTGAACTTGCTTCTAACAATGATTTTGAAGAATTTAAGGTAGCTATAGCTAGCAATGTCTCCTTAATAAATGAAGTTGGCTTCTGGTATGTCCGCCAAAAGGGATCTAAACAAATTGTTCTTGAGCACAGAACCCCTTTAATGGTGGCTGCGTCCTATGGAAGTGTTGATGTTCTTAAGCTTGTACTCTCATGTCCAGAGGCTGATGTAAATTTCTCTTGTGGTAATGATAAAAGCACTGCTCTTCACTGTGCTGCTTCAGGTGGTTCGGTTAATGCAGTTGATGCTGTTAAACTGCTTTTATCCGCTGGTGCGAATATCAACTGTGTGGATGCTAATGGGAACCGTCCAGTTGATGTTATTGTTGTTCCACCTAAGCCTGGAGGTGTGAAAGTAATTCTTGAAGAACTTCTCACCGATAGTGATTCTGATGGCTCTGTTGATGATTGTTCTCTTCCACTATCTGTTAATTCATCAAGTCCTCGTTCAGCTGCCCCTTTATCATCAACTGAAAATGGGTCTCCATCCTCTCCTGTGGCTCCTAAGTTTACTGACGCAGCTGTTAACTCAGCCTCTGAAAAGAAAGAATACCCAATTGATCCGTCACTTCCTGATATAAAAAACAGCATATATGCCACAGATGAATTTCGCATGTTTTCATTCAAGGTTCGCCCTTGTTCTCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTAGAAGGAGAGACCCCAGAAAGTTTCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGCAGACGTGGTGATATGTGTGAATATGCCCACGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGGACAAGACTCTGCAAAGATGGTACTAGTTGTAACCGAAGGGTGTGCTTTTTTGCTCACTTACCTGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCTGCTGTTCCTTCACCCCGGTCAGCTGCATCTGCTCCTAATGTCATGGACATGGCTGCTGCTATGAGCCTTTTTCCTGGTTCACCATCATCAATGTCTCCTATGTCTCCTTCTCCCTTTGCACAGCCAATATCTCCATCTGCAAATGGCATCTCTCACTCAAATAATCCTTGGCCACAGCCAAATGTGCCAGCACTTCACTTACCTGGAAGCAATATTCAAACTAGTCGTTTGAGATCTTCTCTTTGTGCCCGAGATATGCCACTTGAAGACTTCAACAATATGATGCAAGACTTCGACGGTCAGCAGCACATACTAAATGACATGAGCTGTTTCTCACAGCCCCGTCCTGGTGCTATATCAGTGAGTCGATCCGGTCGGTCCAAAACACTAACTCCATCAAATCTTGAGGATCTATTCTCTGCTGAAGTTTCTTCATCTCCTCGGTATTCCGACCCAGCAGCAGCTTCTGTATTTTCCCCAACACACAAATCAGCTGTCTTCAACCAGTTTCAACAGCTTCAAACTTCTGTATTTTCCCCAACACACAAATCAGCTGTCTTCAACCAGTTTCAACAGCTTCAAAGTTCACTATCACCCATCAATACAAATGTCATGTCACCCAAGAATGTTGAGCATCCTCTATTCCACCAGGCTTCATATGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGCATGGAACCCCTCTCTCCAATGAATTCTCGATTGTCAGCATTTGCTCAGCGTGAGAAACAGCAGCAACAGATGCGGAGCCTCAGTTCAAGAGAACTTGGTTCTAACAATCCCATATCGGCTGTTGGGTCTCCTGTCAACTCCTGGTCTAAGTGGGGATCCCCTACCGGAAAAGCAGATTGGTCGGTAAATGGAAATGACTTTGGTCGATCTCAAAGATCCACACCTTTCGAGCATGGAAACAATGGAGAAGAGCCTGATCTATCTTGGGTCCAATCCCTCGTCAAGGAATCTCCACCCGAGATAAAAGAAAAGCATGCAGTTTCTGGCCCTATTCCATCAGCTGAACTGAATTCCAATCCTCAAGTAGAGTCCATCGACCATTCGGTTTTAGGAGCTTGGCTCGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAG 2235 0.4465 MCSGPDKSKSRSTCSSSSAEEGSNNIKDMKNLTVHTDDSFSSLLELASNNDFEEFKVAIASNVSLINEVGFWYVRQKGSKQIVLEHRTPLMVAASYGSVDVLKLVLSCPEADVNFSCGNDKSTALHCAASGGSVNAVDAVKLLLSAGANINCVDANGNRPVDVIVVPPKPGGVKVILEELLTDSDSDGSVDDCSLPLSVNSSSPRSAAPLSSTENGSPSSPVAPKFTDAAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHLPEELRPLYVSTGSAVPSPRSAASAPNVMDMAAAMSLFPGSPSSMSPMSPSPFAQPISPSANGISHSNNPWPQPNVPALHLPGSNIQTSRLRSSLCARDMPLEDFNNMMQDFDGQQHILNDMSCFSQPRPGAISVSRSGRSKTLTPSNLEDLFSAEVSSSPRYSDPAAASVFSPTHKSAVFNQFQQLQTSVFSPTHKSAVFNQFQQLQSSLSPINTNVMSPKNVEHPLFHQASYGVSSPGRMSPRSMEPLSPMNSRLSAFAQREKQQQQMRSLSSRELGSNNPISAVGSPVNSWSKWGSPTGKADWSVNGNDFGRSQRSTPFEHGNNGEEPDLSWVQSLVKESPPEIKEKHAVSGPIPSAELNSNPQVESIDHSVLGAWLEQMQLDQLVV* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4765 744 MobiDBLite consensus disorder prediction 200 223 - -
Psa5g4765 744 SMART ANK_2a 120 152 IPR002110 GO:0005515
Psa5g4765 744 SMART ANK_2a 85 115 IPR002110 GO:0005515
Psa5g4765 744 SMART c3hfinal6 333 356 IPR000571 GO:0046872
Psa5g4765 744 SMART c3hfinal6 298 324 IPR000571 GO:0046872
Psa5g4765 744 Pfam Ankyrin repeats (3 copies) 78 154 IPR002110 GO:0005515
Psa5g4765 744 ProSiteProfiles Ankyrin repeat profile. 120 155 IPR002110 GO:0005515
Psa5g4765 744 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 23 543 - -
Psa5g4765 744 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 541 742 - -
Psa5g4765 744 PANTHER UNKEMPT FAMILY MEMBER 541 742 IPR045234 -
Psa5g4765 744 PANTHER UNKEMPT FAMILY MEMBER 23 543 IPR045234 -
Psa5g4765 744 MobiDBLite consensus disorder prediction 200 222 - -
Psa5g4765 744 ProSiteProfiles Zinc finger C3H1-type profile. 303 325 IPR000571 GO:0046872
Psa5g4765 744 Gene3D - 6 166 IPR036770 -
Psa5g4765 744 Gene3D - 299 361 - -
Psa5g4765 744 MobiDBLite consensus disorder prediction 1 27 - -
Psa5g4765 744 MobiDBLite consensus disorder prediction 614 647 - -
Psa5g4765 744 SUPERFAMILY Ankyrin repeat 32 177 IPR036770 -
Psa5g4765 744 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 323 IPR000571 GO:0046872
Psa5g4765 744 ProSiteProfiles Ankyrin repeat region circular profile. 120 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4765 Psa-Chr5 424876528 424880433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4765 1 741 C2H2 Transcription Factor Family AT5G12850 52.425 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g4765 Ank_2 1.9e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4765 - - gmx:100792574 1128.62