Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4758 ATGAGGAAACCTGATATGATCATGGCAAAAGAACACAACAACGTTAACAAGAACAAACTAAGGAAAGGTCTATGGTCACCCGAGGAAGATGAGAAGTTGATAAGGTACATGATAACTAAAGGACAAGGCTGTTGGAGTGACATTGCTAGAAATGCTGGTCTTCAAAGATGCGGCAAAAGTTGTCGTCTTCGTTGGATTAATTACTTGAGACCCGATCTTAAGCGCGGCGCGTTTTCGCCACAAGAAGAAGAACTCATCATTCATTTCCACTCCATTCTTGGCAACAGATGGTCTCAGATCGCGGCGCGTCTCCCTGGTCGCACTGACAATGAAATAAAGAATTTTTGGAATTCTACGTTGAAGAAGAGATTGAAAAACAACACTCCATCTCCAAACAATAGTGATTTATCGGAACAACTCATAGATAATGTTTTTGATGTGAAAAACGATATGATGATGCCGATAAATGAACAAGAACTCATGACATTGTGCATGGATTCATCCTCATCAACTTCATCATCATCCATGCAATCCATGCAGATGCATGCCATGGTTTTAGCCGAACAATTTGATCCATTTTCATTGCTGTCGAGTAATCGTTATGACATGATGACAAGTTTTCATGCTCATGCTCATCATGACATGCCAACATGCTTAACACAAGTTGGTAACATGGTTGATGATATTGGGCTTCATAGTGATGATTATGGGATTTTGGAGGATAATAAAATGGGGTTATTAGAAAATGATTTTGAACTTCCTCCACTAGAAAGTAGAATTAGCATTGAAGACAAGAGTGTCCCAATTGATGATGATCTTAGTATGAAAAGCCATATCAACCACTTCAATAATAGTTGCTTCAATAACACTAATCACATTCAAAACTCTAATGTAGAGGACTTGTTTGGATTTGGAAATCATGGCCAAGGAGAAAACTTAAGAATGGGAGAATGGGATATGGAGGGTTTAATGCAAGACATATCCTATTTTCCTCCTCTTGATTTTCAAGTTTAA 1014 0.3836 MRKPDMIMAKEHNNVNKNKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKNNTPSPNNSDLSEQLIDNVFDVKNDMMMPINEQELMTLCMDSSSSTSSSSMQSMQMHAMVLAEQFDPFSLLSSNRYDMMTSFHAHAHHDMPTCLTQVGNMVDDIGLHSDDYGILEDNKMGLLENDFELPPLESRISIEDKSVPIDDDLSMKSHINHFNNSCFNNTNHIQNSNVEDLFGFGNHGQGENLRMGEWDMEGLMQDISYFPPLDFQV* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4758 337 CDD SANT 77 120 IPR001005 -
Psa5g4758 337 Gene3D - 19 75 - -
Psa5g4758 337 CDD SANT 25 69 IPR001005 -
Psa5g4758 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Psa5g4758 337 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Psa5g4758 337 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Psa5g4758 337 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Psa5g4758 337 PANTHER TRANSCRIPTION FACTOR MYB83 1 337 - -
Psa5g4758 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Psa5g4758 337 Gene3D - 76 141 - -
Psa5g4758 337 SMART sant 21 71 IPR001005 -
Psa5g4758 337 SMART sant 74 122 IPR001005 -
Psa5g4758 337 PANTHER MYB DOMAIN PROTEIN 55 1 337 - -
Psa5g4758 337 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Psa5g4758 337 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4758 Psa-Chr5 424031585 424033499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4758 1 337 MYB Transcription Factor Family AT3G08500 44.709 9.84e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g4758 Myb_DNA-binding 4.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4758 K09422 - gmx:100813660 423.705