Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4742 ATGTGGAAATTTAAGCCATTCAGCCACAAAGAGCAAAGTGGTATTGAAGGCCGTTCTATAGATGTTGGAAATCTTAAAATAAATGTCCACAAGGTCATTGCTGAAGGAGGGTTCTCATGTGTCTACTTGGCTCGCGATTCTGTACATATGTCTAAACAGTATGCTTTGAAGCACATAATATGCAATGATGAAGAATCACTTGGATTGGTGAAGAAGGAGATATCTGTGATGAAATTGCTGATTGGACATCCCAATGTCGTCAAACTTCTTGCTCATGCCATCTATGATATGGGTAGAACCAAAGAGGCATTCCTTGTAATGGAATTTTGTGAGAAATCTCTGGTTACTGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAGACAGATTCTTTTAATGTTCAGGGATGTGTGTAACGCAGTTTTCGCCATGCACTGCCAGTCCCCGCCTATTGCTCACCGAGACTTGAAAGCAGAGAATATTCTGTTAGGTTCAGATGGTTTATGGAAGTTATGTGATTTTGGAAGCATTTCCACAAATCACAAACGTTTTGAGAAACCAGAAGAAATGGGAATTGAGGAAGATAATATCAGAAAGTACACAACTCCCGCTTACAGAGCTCCAGAGATGTGGGACCTGTTTCTCAGAGAAGTCATTAATGAGAAAGTAGACATATGGGCACTGGGATGTCTCCTTTTTCGCATTTGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTTACCTAAATTCAGCTCGTTCCTCACAGACTTGATCAGAGACATGCTTCAAGCTAGACCAGACGACAGACCAGATATCACGCAGGTTTGGTTTCGTGTTAATGAAAAGCTACCCGTTGATTTACAAAAGTCATTACCTGACAGGCCACCTGAATCGCCCTCTTCCAACAATCACGAAGGTGCTTCAATGTCCACAAACAAATCAAATCCAATGCCTCGCAGAAATCCACCTTCTCCTCCATCAGTTGGAGAACCCAAAACTACCCATCAGCCATCTCCTCCTTCCAAGGGAGGCGAAAGTGGGGGGCAGCTTGGTGCTTTCTGGTCCACTCTGCATGCAAAGGATTCACTTGTCCCTGAGGAAAAGGACAAAGCTATATATGATGAAGAACGATCTAGCCACCATGTGTCACCGAAACATGACAGAATTCGTCCCGACAATGATCAGTTACCCAAAAATGTTGGTACGAACAAAGTGGCCAACACACAAACTCAGACTGCAAAAAGCAGTGTACATGGGAAGTTACACAAGCCCGAAGTTGCATCTTCCAAGGACTTTGAAATTAATTTTTTCCCAGATAAAGATCATGCAAGTCAGAGGCATATGTCAAATCTGGAGAAGAATACTAATTTCCAAGACCAGTCTTTTAACACTTTTGTTGCAGAATTTGATACCACAAAGCTGAACTCCGGGCACGGTAACAAATCCACCAGGGAAGAAGTATTAGAGTCTGAGGTGGAGAAACTCAAAGAGCAGCTGAAGGAAGCTAACTTAGAGAAATCTGAAATAACTGCAAAGTATGAAAAGCTTACTGCTATCTGCCGTTCTCAGAGGCAAGAATTGCAGGACCTCAAGCAAGCACTTGCAGCAAGAGCTCCATCTCCAAATAGAGAGAGTTTCAGAACCTCTCCTGGAGTTGCAACATCTGCATCTTTGCAGGATAGAAATGAATGGAAAACTCCTAGTTCAGAACTAAAGTCATGGTTAGCTTTCCCAGAGAAAACTGAAGCACCGATGAAGTCCCTTTCAGCAGACAATGCTTCTAAATCCGTTAGGTCAAGAGATGGTCAGCAGAAAAAGCCGGTCACTCAACCAGCTTCTGATTTTGATTCTTGGGGTTTTGGTACAGATACATTTAGTGCTGCTCGTGCTGGTAGTGGTAGCCCACAGATGCCAAGACCTGGCGAAGGAAGTAAAGCTCATGTTTTTGGCGAGGCAAAGGGTTTTGAGAGCAAGTCAAATTCTCAACCTGCTGGATGGGCTGGTTTTTAA 2052 0.4318 MWKFKPFSHKEQSGIEGRSIDVGNLKINVHKVIAEGGFSCVYLARDSVHMSKQYALKHIICNDEESLGLVKKEISVMKLLIGHPNVVKLLAHAIYDMGRTKEAFLVMEFCEKSLVTVLESRGAGYFDERQILLMFRDVCNAVFAMHCQSPPIAHRDLKAENILLGSDGLWKLCDFGSISTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKFSSFLTDLIRDMLQARPDDRPDITQVWFRVNEKLPVDLQKSLPDRPPESPSSNNHEGASMSTNKSNPMPRRNPPSPPSVGEPKTTHQPSPPSKGGESGGQLGAFWSTLHAKDSLVPEEKDKAIYDEERSSHHVSPKHDRIRPDNDQLPKNVGTNKVANTQTQTAKSSVHGKLHKPEVASSKDFEINFFPDKDHASQRHMSNLEKNTNFQDQSFNTFVAEFDTTKLNSGHGNKSTREEVLESEVEKLKEQLKEANLEKSEITAKYEKLTAICRSQRQELQDLKQALAARAPSPNRESFRTSPGVATSASLQDRNEWKTPSSELKSWLAFPEKTEAPMKSLSADNASKSVRSRDGQQKKPVTQPASDFDSWGFGTDTFSAARAGSGSPQMPRPGEGSKAHVFGEAKGFESKSNSQPAGWAGF* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4742 683 PANTHER NUMB-ASSOCIATED KINASE, ISOFORM A 1 672 - -
Psa5g4742 683 CDD STKc_GAK_like 26 298 - -
Psa5g4742 683 MobiDBLite consensus disorder prediction 332 347 - -
Psa5g4742 683 MobiDBLite consensus disorder prediction 301 360 - -
Psa5g4742 683 ProSiteProfiles Protein kinase domain profile. 27 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4742 683 MobiDBLite consensus disorder prediction 601 634 - -
Psa5g4742 683 MobiDBLite consensus disorder prediction 669 683 - -
Psa5g4742 683 Coils Coil 499 547 - -
Psa5g4742 683 MobiDBLite consensus disorder prediction 556 578 - -
Psa5g4742 683 SUPERFAMILY Protein kinase-like (PK-like) 28 341 IPR011009 -
Psa5g4742 683 MobiDBLite consensus disorder prediction 308 331 - -
Psa5g4742 683 Gene3D Transferase(Phosphotransferase) domain 1 9 305 - -
Psa5g4742 683 PANTHER SERINE/THREONINE PROTEIN KINASE 1 672 - -
Psa5g4742 683 MobiDBLite consensus disorder prediction 547 683 - -
Psa5g4742 683 SMART serkin_6 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4742 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Psa5g4742 683 Pfam Protein kinase domain 29 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4742 Psa-Chr5 421824344 421827543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4742 26 292 Miscellaneous Gene Families AT2G34180 29.893 4.43e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Psa5g4742 Pkinase 6.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4742 K08853 - gmx:100780879 1029.24