LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g4737	ATGGCAAAATCTATACCAAAAATTGGTTCACGGAAAACTGGATGTATTGGTTCGCGTAAGCATCCTCGTAAAATACCAAAGGGGGTTATTTATATTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTACGAGGTCGGGTGATTTCTTGGTCCTCCGCCGGCTCATGTGGATTCAAGGGTACACGAAGGGGGACACCATTTGCCGCTCAAACCGCAGCGGGAAATGCTATTCAAACAGTAGTCGAGCAAGGCATGCAACGAGCAGAAGTAAGGATAAAGGGTCCGGGTCTAGTAAGAGATGCGGCATTAAGAGCTATTTATAGAAGTGGGATACTATTAAAGGTTATACGGGATGTAACCCCTCTGCCACATAATGGATGTCGGGCTCCTAAAAAAAGACGTGTGTAA	417	0.446	MAKSIPKIGSRKTGCIGSRKHPRKIPKGVIYIQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAAQTAAGNAIQTVVEQGMQRAEVRIKGPGLVRDAALRAIYRSGILLKVIRDVTPLPHNGCRAPKKRRV*	139

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g4737	138	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	7	138	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Psa5g4737	138	ProSitePatterns	Ribosomal protein S11 signature.	106	128	IPR018102	-
	Psa5g4737	138	PANTHER	30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC	1	137	-	-
	Psa5g4737	138	Hamap	30S ribosomal protein S11 [rpsK].	3	138	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Psa5g4737	138	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	1	137	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Psa5g4737	138	TIGRFAM	uS11_bact: ribosomal protein uS11	20	135	IPR019981	GO:0003735\|GO:0005840\|GO:0006412
	Psa5g4737	138	SUPERFAMILY	Translational machinery components	24	138	-	-
	Psa5g4737	138	Pfam	Ribosomal protein S11	28	137	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Psa5g4737	138	Gene3D	Ribosomal protein S11	12	138	IPR036967	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g4737	Psa-Chr5	421693829	421694649	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g4737	28	128	Cytoplasmic Ribosomal Protein Gene Family	AT3G11510	37.273	4.42e-14	63.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g4737	K02948		-	csin:14412458	236.498