Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4688 ATGCAATCCATGCTCAAAGAATGTCACAAGCATCTCTCTGGTCTCGACGAAGCCGTTCTCAAAAACACTGATGCCTGTAACCAACTCTTCACCATCACTCGCACTTCCCTCGGCCCCAACGGGATGAATGAGATGGTTACAAATCATTTGGATAAACTTTTTATGACGAATGATGCTGCTACGATTGTGAATGAACTTGAAGTTCAACATCCTGCTGCTAAGATTTTGGTGTTGGCTAGTAAGGCTCAGCAAGAGGAAATCGGTGATGGTGCTAATTTGACTATGTCTTTTGCCGGCGAGTTGCTTCATGGTGCCGAGGAGCTTATTAGGATGGGTTTGCATCCTAGAAGACCTCAGGGAGATTCTTTTGAACCATTGACTGTCAAGCAGGGGAAGAAGCACATTAGCACACCCGTTCCTCATGATTCATACTCGGTTCTTCTTGTAAGCAGTTCAGGAAAGTATTTAGCAATCGTATGGCCAAATATTCCTTGTTTCTCTGTCTACAAGGTCAGTGATTGGTCAATTGTTGACTCTGGCAGTGCAAGGCTTCTCGCTTGGGATGCTTGTTGTGACAGATTTGCTATATTGGAATCATCATTACCTCCCCGAATTCCTATAATTCCCAAGGGTAGTTCATCAAAAAGAGCAAAAGAAGTTGCCGCAGCTGCTGCTGGTTCCTCAACTTCTGTTCAAGTGCGAACCGTGTTGGATGATGGAACATCAAATATACTAATGAGATCTGTTGGTGCACGTAATGAACCAGTCATTGGTTTGCATGGAGGGGCACTGCTTGGTGTTGCCTATCGGACATCTAGAAGAACCAGTCCAGTTATGCAAGAATGGGAATCCATCACCGGACATCACTTATTGGAGCGAGATGGCATGACAGAATTTGTCATGGCACTCTCAAATCCTTTGAAAGGTGAGCGTAAAGCAAGCACCGTTGGCAAACCATTACTTGGTATGCAGGTCAAGATTCTTGCAGATGAGGAGCATGAGAGTGAGGAATCAGGGATTGCTGTTATTACTGATAATGTTGGTGATATTGCTGGTATGGGATCCGATCTATTTGGTGCGTATGCAGAGGCATCTTGTGCAGCCCTTAGGCTTATCATTGGATTTGTCACTGAATACTATACCGGCGATGCATACAGCCTTGTGCAAGATGTTGCTGATTCCTGCAGGACTGCAACCGGAGTAGCCATCGATGCATACGGTCCAATCTGTGACAATGCCAGAGTTGTTGCCGAGATGGCTGGAATGAGTCACAAAATTCGTGAGAGAACCGATGCTCTTGATGCTGCAGGAAACACAACTGCTGCCATTGGAAAGGGGTTTGCTATTGGTTATGTCGCCCTTGTGTCTTTGGCTCTTTTTGGTGCCTTTGTGAGCCATGCTGGTATTACAACAGTTGATGTCCTGACTCCCAAGGTTTTCATCGGTCTGATTGTGGGTGCCATGCTCTCTTACTGGTTTTCTGACCTGACCATGAAGAGTGTTGGAAGCGCATCATTGAAGATGGTTGAGAAAGTTTGCAGGCAATTCAACACGATTCCCGGATTGATGGAGGGAACTGCGAAACCTGACTATGCCACATGTGCTACAATCACCACCTTAGATCCAAGTCATGGCTCTTGTCTATATCTTGGAAGTTTTGGCAACAAAAATAGCACCTTTGGCAACTTCACAGCACCATTAATGAATTCAAATTCCGATTCTTCAGCCTACAACATCCACAGCCGCTCAAAAATAGCACCTTTGGCAACTTCACAGCACCATTAA 1785 0.4532 MQSMLKECHKHLSGLDEAVLKNTDACNQLFTITRTSLGPNGMNEMVTNHLDKLFMTNDAATIVNELEVQHPAAKILVLASKAQQEEIGDGANLTMSFAGELLHGAEELIRMGLHPRRPQGDSFEPLTVKQGKKHISTPVPHDSYSVLLVSSSGKYLAIVWPNIPCFSVYKVSDWSIVDSGSARLLAWDACCDRFAILESSLPPRIPIIPKGSSSKRAKEVAAAAAGSSTSVQVRTVLDDGTSNILMRSVGARNEPVIGLHGGALLGVAYRTSRRTSPVMQEWESITGHHLLERDGMTEFVMALSNPLKGERKASTVGKPLLGMQVKILADEEHESEESGIAVITDNVGDIAGMGSDLFGAYAEASCAALRLIIGFVTEYYTGDAYSLVQDVADSCRTATGVAIDAYGPICDNARVVAEMAGMSHKIRERTDALDAAGNTTAAIGKGFAIGYVALVSLALFGAFVSHAGITTVDVLTPKVFIGLIVGAMLSYWFSDLTMKSVGSASLKMVEKVCRQFNTIPGLMEGTAKPDYATCATITTLDPSHGSCLYLGSFGNKNSTFGNFTAPLMNSNSDSSAYNIHSRSKIAPLATSQHH* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4688 594 Gene3D - 257 390 IPR042099 -
Psa5g4688 594 ProSitePatterns Chaperonins TCP-1 signature 2. 55 71 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Psa5g4688 594 SUPERFAMILY Acetyl-CoA synthetase-like 275 361 - -
Psa5g4688 594 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 371 398 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa5g4688 594 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 398 539 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa5g4688 594 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 298 369 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa5g4688 594 SUPERFAMILY GroEL equatorial domain-like 10 117 IPR027413 -
Psa5g4688 594 Gene3D - 1 118 IPR027413 -
Psa5g4688 594 PANTHER INORGANIC DIPHOSPHATASE, H+-TRANSLOCATING, VACUOLAR MEMBRANE 298 369 - -
Psa5g4688 594 PANTHER INORGANIC DIPHOSPHATASE, H+-TRANSLOCATING, VACUOLAR MEMBRANE 371 398 - -
Psa5g4688 594 PANTHER INORGANIC DIPHOSPHATASE, H+-TRANSLOCATING, VACUOLAR MEMBRANE 398 539 - -
Psa5g4688 594 PRINTS Tailless complex polypeptide 1 (chaperone) signature 31 47 IPR017998 GO:0140662
Psa5g4688 594 PRINTS Tailless complex polypeptide 1 (chaperone) signature 53 71 IPR017998 GO:0140662
Psa5g4688 594 PRINTS Tailless complex polypeptide 1 (chaperone) signature 83 102 IPR017998 GO:0140662
Psa5g4688 594 Pfam Inorganic H+ pyrophosphatase 397 539 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa5g4688 594 Pfam TCP-1/cpn60 chaperonin family 31 116 IPR002423 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4688 Psa-Chr5 416351521 416354436 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4688 371 549 Primary Pumps ATPases AT1G15690 63.043 5.44e-79 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4688 K23025 - gmx:100777567 269.24