Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4682 ATGTCCTCCAGGGTTTGCAAGTTCTATGCCCGAGGGATATGTTTGAAAGGGGATCAATGTGATTTTTCTCATCAGAGAAAGGATACTCATCAAAGAAAGGATAATCCAGTTGATAAACAGATTTGCTCCTATTATCAGAAAGGTTCTTGTGCTTATGGTAGTCGGTGCAGATATAAGCATGTCAAAGCTTCTCAAGCATCATCTTCGGCATCTTTGGTTCCAAATTGTGCTGTGGCTCACGGTGTTAAACTAGCACCGAGTTGGGTTCCGAAGGTTACAAGAGTTCCTCCTCCGCCTTGCAAGCATGGCGTAAGGAGTTTTCAACACAACCATCAGGACTCTAGCGATGTTGGTGAATCTAGTAGTACTGGTAGTACTAGTGCTAGACTGCATGGACATTTGTTTTGTAAATTTGCCGCGGCAAACTGTCCCTTTGGACATGGATGTTCTCGTGTTCATGGAAATCAATGTTTATACTGTAGAAAATATTGCTTGCATCCTAGTGATAGAAGAGAAAAAGAAAATCATTTGAAGACTTGTGACAAAAAGGAAAAGTACGTTCTGGCTTTGAAAAATAGCGAAGAAATAGAATGCAATGTTTGTCTCGAGCGTGTCCTTTCCAAACCCAAACCATCAGAACGGAAGTTTGGGTTGCTTCCAGAATGTGACCATGCTTTTTGTTTGTCATGTATCCGCAATTGGCGTAATAGTGCCCCAAGCTCTGAATTTGAAACGGGTAATAATATCAATACAGTTAGAACCTGCCCTGTTTGCCGCCAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATACTACAAAGGAAGAAAAACAGGAAATTATTGATAACTACAAGGCAAACTGCAGATTGATTGATTGCAAACATTTCGAATCTGGTAATGGGAATTGTCCATTTGGGGCTAGTTGTTTTTACAAGCATACAGTGAAGCCTGGCTCATACACATGGATACACCACAGGCCTCCACCTCAACGTAAACAAACCGATTTTGATATGTATGACATGTTGGACATGCTCAGTGAAGTCGATCTATCAAGCGGAGAATTTTATTCCATCATGAGGGACTCAGAATTTTTTGATGAGATGGATCCATTAGAGATGATGGCTTTATCAGATTCTCAGGCTGGTGGTTCGGTTCCCTGTTTGGGTCCTTTTGAGTCTGATGATGAGGGGGATAACTTCAATGTTTTTCGAATGGCTGCTATGTCAGAGGCCCTAGATAACTTGGATGATTTTGGCCCTGATGATTTTGGCCCAGATGATTTCGACCCAGATGATTTTGATGAATTGGATCCTATGGAGGCAGCCTTGATATCCATGATGATGCATTCCAATATTGATGAAGATAGTGAGGATGAGTATTAG 1386 0.412 MSSRVCKFYARGICLKGDQCDFSHQRKDTHQRKDNPVDKQICSYYQKGSCAYGSRCRYKHVKASQASSSASLVPNCAVAHGVKLAPSWVPKVTRVPPPPCKHGVRSFQHNHQDSSDVGESSSTGSTSARLHGHLFCKFAAANCPFGHGCSRVHGNQCLYCRKYCLHPSDRREKENHLKTCDKKEKYVLALKNSEEIECNVCLERVLSKPKPSERKFGLLPECDHAFCLSCIRNWRNSAPSSEFETGNNINTVRTCPVCRQLSYFVIPSGIWYTTKEEKQEIIDNYKANCRLIDCKHFESGNGNCPFGASCFYKHTVKPGSYTWIHHRPPPQRKQTDFDMYDMLDMLSEVDLSSGEFYSIMRDSEFFDEMDPLEMMALSDSQAGGSVPCLGPFESDDEGDNFNVFRMAAMSEALDNLDDFGPDDFGPDDFDPDDFDELDPMEAALISMMMHSNIDEDSEDEY* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4682 461 Pfam CCCH-type zinc finger 41 60 IPR041367 -
Psa5g4682 461 SMART ring_2 198 258 IPR001841 -
Psa5g4682 461 PANTHER MAKORIN-RELATED 1 460 IPR045072 -
Psa5g4682 461 ProSiteProfiles Zinc finger C3H1-type profile. 36 63 IPR000571 GO:0046872
Psa5g4682 461 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Psa5g4682 461 ProSiteProfiles Zinc finger C3H1-type profile. 288 317 IPR000571 GO:0046872
Psa5g4682 461 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 460 - -
Psa5g4682 461 SUPERFAMILY RING/U-box 187 265 - -
Psa5g4682 461 Pfam RNA-binding, Nab2-type zinc finger 136 154 - -
Psa5g4682 461 Pfam RNA-binding, Nab2-type zinc finger 293 314 - -
Psa5g4682 461 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Psa5g4682 461 Gene3D - 37 124 - -
Psa5g4682 461 CDD RING-HC_MKRN 198 259 - -
Psa5g4682 461 Pfam zinc-RING finger domain 197 260 IPR001841 -
Psa5g4682 461 Gene3D - 1 35 - -
Psa5g4682 461 SMART c3hfinal6 37 62 IPR000571 GO:0046872
Psa5g4682 461 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Psa5g4682 461 SMART c3hfinal6 288 316 IPR000571 GO:0046872
Psa5g4682 461 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Psa5g4682 461 ProSitePatterns Zinc finger RING-type signature. 222 231 IPR017907 -
Psa5g4682 461 SUPERFAMILY CCCH zinc finger 36 60 IPR036855 GO:0046872
Psa5g4682 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 270 IPR013083 -
Psa5g4682 461 ProSiteProfiles Zinc finger RING-type profile. 198 259 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4682 Psa-Chr5 416018774 416023287 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g4682 zf-RING_5 3.1e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4682 K15687 - gmx:100788886 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4682 5 416018774 416023287 Psa5g4682 5 416018774 416023287 ECH