Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4648 ATGTCTGAGAAACAGTTTGGCAATGAAGAGAAGAGAAAGCTAAAGCGCAAGATGGAAGAAAGAGTTGGTGATGATGATTCAGAATTAGGGTTGTCACTGTCTCTGAGTCTAGGAGGATCTTCACCGAAAACCCTAAAGCGTCAGCGTCTGGAGGATGAGAAGAGGGAACATCCATGTAAGTTTTGCGACAAGAAGTTTTCAAGCTCACAAGCATTGGGAGGACACCAGAATGCTCATAGACGTGAAAGGGTGCTTTCAAGAATAGACAAAGAAATTCAATTGGGAACTTTTGGATATGGTGGTTATAATTTTCCATATCCCTTCATGACTTCAGGGTCATCTTTTTATAATGGAGTTGGAGGTTCATCATTTGTTGCACCTGCTGGCTATGGGATTGGCAACCCATTTGGTGGCTATAATAGATCTACTTGGTCTCCTTCATTTGTTGGTGCTGGAGTTAACAATGTCCCAAATGATCACCACATTTCATCCTCATTTCCTCATTTCTCCAATCATTAG 519 0.4162 MSEKQFGNEEKRKLKRKMEERVGDDDSELGLSLSLSLGGSSPKTLKRQRLEDEKREHPCKFCDKKFSSSQALGGHQNAHRRERVLSRIDKEIQLGTFGYGGYNFPYPFMTSGSSFYNGVGGSSFVAPAGYGIGNPFGGYNRSTWSPSFVGAGVNNVPNDHHISSSFPHFSNH* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4648 172 Pfam C2H2-type zinc finger 57 82 - -
Psa5g4648 172 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Psa5g4648 172 SUPERFAMILY beta-beta-alpha zinc fingers 54 84 IPR036236 -
Psa5g4648 172 MobiDBLite consensus disorder prediction 33 52 - -
Psa5g4648 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Psa5g4648 172 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 50 111 - -
Psa5g4648 172 MobiDBLite consensus disorder prediction 1 27 - -
Psa5g4648 172 Gene3D Classic Zinc Finger 38 95 - -
Psa5g4648 172 MobiDBLite consensus disorder prediction 1 28 - -
Psa5g4648 172 PANTHER ZINC FINGER PROTEIN JAGGED 50 111 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4648 Psa-Chr5 412564091 412564798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4648 31 111 C2H2 Transcription Factor Family AT1G24625 38.272 3.24e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g4648 zf-C2H2_6 1.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4648 - - mtr:MTR_2g067740 132.494