Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4629 ATGAATTTTCCTCATAGAATTATAATAACATATAGAACAATTGAACTATCATTAATGTCAGAACAAGATTCTGATTCATGGAGTTTCTTGTTCTTCTGTCTTTTGATCCTTTTCTCAGGTAAACTAGTTGTTGGTGATTCATTGGAAACTGATAAACAAGTACTATTGAAGTTAAAATCCTATTTGCAGAATCAAACAGTTTCAAATAGAGGAGATTACATAAGATGGAACATGAACAATTCAAATCCTTGTGATTGGTCAGGGATATCATGCAGCATGATCACAGGAAAAACAAGGGTTGTGAGTGTTGATATCTCAGCGAGCGAGGTTGCAGGTAAGATGTTTGATCATTTTTCTCAGTTAAGCGAACTTACGCATCTTGATGTCTCGTGGAACACTCTCTGTGGAGAGATTCCTGAGGATTTAAGGAAGTGTGGTAATCTTGTGTATCTCAATTTATCTCATAATATTCTCCATGGAGAGATGAATTTGACGGGTTTGAGAAAGTTGAGAACATTGGATTTGTCGACGAATAGACTTCAAGGGGAGCTTTCGTTGAGTTTTCGTGATCATTGCGATAGTTTGGTTAGTTTGAATGTTTCGGATAATCACTTTTTTGGTAGGATTGATGAGTGTTTTGATAAATGTTCAAGGTTGAAGTATTTGGATTTGAGTACGAATAATATAAGTGGTGCTTTATGGAATGGGATTTCGAGGTTGACACAGTTTTCTGTTTCGGAGAATTTTCTAACTGGGAATGTTCCTTCTCATGCCTTTCCTATGAATTGTAGTCTTGAAAAATTGGATCTTTCTGTCAACGGATTTTTCGGGAAACCGCCTAAGGAAGTTGCTAACTGTAAGAATTTAGAGATTCTCAATCTTTCTAGTAACAAATTTAGCGGTGAAATACCTCGTGAAATTGGTTCGATTTCTGGTCTCAAATCACTTTTCTTGCAGAATAACACGTTTTCAAGAGATATTCCGGATACACTTTTGAATTTGACAAATTTGTATATTTTGGATGTAAGCAGGAACAAATTTGGTGGTGAGGTACAAGACATTTTCGGTAAATTCAAGCAATTGAGGTTTCTTTTGTTGCATGCAAATTCTTATGTAAAAGGATTGAATGAATCAGGAATCTTCACATTGAGTAATCTTACAAGATTAGACTTAAGTTTCAACGACTTTTCAGGTCCATTACCAGCCGAAATCTCTCAAATGTCTGGTCTCATATTCTTATCGTTAAGCCACAACAACTTTAATGGAACTATTCCGTCTGAATTAGAGAAGTTGAGTAAATTGCAAGCACTTGAACTTGCTTTCAATAGTTTCAACGGACCAATTCCAGGAAGCTTAGGAAAGTTGAATTCTCTCTTGTGGTTAATGCTTGCCAACAATTCGCTAACAGGTCAAATCCCGCACGAGTTAGGTAACTGTTCAAGTTTGTTATGGTTGAACCTTGCAAACAACAAACTCACTGGAAAATTTCCTTCTGAGTTGACCAGAATCGGAAGAAATGCTATGGAGACATTTGAATTAAACCATAAGAACATGGTTGGTGTTGTTGCTGGAAATAGCGAGTGTTTATCGATGAAAAGTTGGATACCTGCTGATTATCCTCCATTCAGTTTTGTGTATAGTATCTTAACACGGAAAAATTGTAGAGCCCTTTGGGATAGATTACTCAAAGGATATGGAATTTTTCCCATGTGTGCATCAGAACCTTCTACTAGATCATCTCATAAATTTGGTTATGTTCAGTTAAGTGGTAACATGATTAGTGGTGAAATTCCTTCAGAAATTGGGAGCATGCTGAATTTCAGCATGTTGCATTTAGGTGACAACAGATTCAATGGCGAATTCCCGAAAGAGATTGGTGGTTTGCCACTTATAGTCTTGAACATGACTAGGAACAAGTTTTCAGGTGAAATTCCAGAGGAAATCGGTAACATGAAGTGCATGCAGAATCTTGATTTGTCCTGGAACAATTTCTCAGGTGCATTTCCAACAAGTTTGGTTAAATTGGATGAGCTTAGCAGGTTCAATATCTCATATAATCCTTTGTTATCTGGTACAGTACCTCTAAACGGACATTTGCTTACTTTTGATAAAGATTCGTATTTAGGCGATACCCTCTTAGACCTTCCAAAATTCTTTGATAATAATACTCCAGATGGAAAAAACAAAACATTACATATACATATGAAAAAAGCAACAAAATGGTATTTTTGTGTTGCTCTAACACTAGCTATTTTGGTTTCCGGACTTCTTTTTCTAACTGTCTATTTCTTGGTGAAAAGTCCGTCTGAGGAACAAGGAAAGTTTCTGAATGATAAAAACCGAAAGCATAATGGTTCAGGTAGCTATGGATCGTCACAATGGTTATCTGATACCGTCAAGATATTCCATTTGAACAATGTAGTTTTCACGCATGCCGACATTTTGGAAGCAACAAGCAACTTCAAAGAAGAGAGAATCATAGGAAAAGGCGGTTTCGGAACGGTCTACAGAGGAGTTTTTCCTGATGGAAGAGTAGTGGCAGTGAAGAAGCTACAAAGAGAAGGAACTGAAGGCGAGAAAGAATTCAAAGCTGAAATGAAAGTCCTCAGTGGTCAAGAATTCGGTTGGCCTCATCCAAATCTTGTCACACTTTATGGTTGGTGCTTATACGGTTCACAGAAGTTACTAGTTTACGAGTACATAGGAGGCGGAAGTTTGGAAGAACTAGTAACCGATACAAAAAACTTGACTTATAAAAGGCGGTTAGAAGTCGCGATTGATGTGGCTAAGGCATTACTTTATCTACACCATGAATGTCACCCTCCAATCGTGCATAGAGACGTGAAGGCTAGTAATGTGTTGCTTGACAAAGAAGGTAAAGCGAAAGTAACAGATTTCGGGCTTGCTAGAGTCGTCGATGTCGGTGATAGCCATGTGAGTACGATTGTTGCAGGAACTGTCGGATATGTTGCACCGGAATACGGGCAAACATGGCAAGCTACAACAAAAGGTGACGTGTATAGTTTCGGCGTGTTGATCATGGAGTTAGCGACCGGGAGAAGAGCTGTGGATGGAGGTGACGAATGTTTGGTTGAATGTGTTAGGCGTGTGATTGGTTCAGGTAGAAATGGATTGAGTCATTTTGGGCTGGTTGGTAGTGCAAAAGAGATGTTTGAGTTGCTTTTTGTTGGAGTGAAGTGCACAAATGACTCACCACAAAATAGGCCTAACATGAAAGAGGTTCTAGCTATGTTGATTAAGATATTCAATTCTCATAGAAATTCAAACTATTGA 3294 0.3795 MNFPHRIIITYRTIELSLMSEQDSDSWSFLFFCLLILFSGKLVVGDSLETDKQVLLKLKSYLQNQTVSNRGDYIRWNMNNSNPCDWSGISCSMITGKTRVVSVDISASEVAGKMFDHFSQLSELTHLDVSWNTLCGEIPEDLRKCGNLVYLNLSHNILHGEMNLTGLRKLRTLDLSTNRLQGELSLSFRDHCDSLVSLNVSDNHFFGRIDECFDKCSRLKYLDLSTNNISGALWNGISRLTQFSVSENFLTGNVPSHAFPMNCSLEKLDLSVNGFFGKPPKEVANCKNLEILNLSSNKFSGEIPREIGSISGLKSLFLQNNTFSRDIPDTLLNLTNLYILDVSRNKFGGEVQDIFGKFKQLRFLLLHANSYVKGLNESGIFTLSNLTRLDLSFNDFSGPLPAEISQMSGLIFLSLSHNNFNGTIPSELEKLSKLQALELAFNSFNGPIPGSLGKLNSLLWLMLANNSLTGQIPHELGNCSSLLWLNLANNKLTGKFPSELTRIGRNAMETFELNHKNMVGVVAGNSECLSMKSWIPADYPPFSFVYSILTRKNCRALWDRLLKGYGIFPMCASEPSTRSSHKFGYVQLSGNMISGEIPSEIGSMLNFSMLHLGDNRFNGEFPKEIGGLPLIVLNMTRNKFSGEIPEEIGNMKCMQNLDLSWNNFSGAFPTSLVKLDELSRFNISYNPLLSGTVPLNGHLLTFDKDSYLGDTLLDLPKFFDNNTPDGKNKTLHIHMKKATKWYFCVALTLAILVSGLLFLTVYFLVKSPSEEQGKFLNDKNRKHNGSGSYGSSQWLSDTVKIFHLNNVVFTHADILEATSNFKEERIIGKGGFGTVYRGVFPDGRVVAVKKLQREGTEGEKEFKAEMKVLSGQEFGWPHPNLVTLYGWCLYGSQKLLVYEYIGGGSLEELVTDTKNLTYKRRLEVAIDVAKALLYLHHECHPPIVHRDVKASNVLLDKEGKAKVTDFGLARVVDVGDSHVSTIVAGTVGYVAPEYGQTWQATTKGDVYSFGVLIMELATGRRAVDGGDECLVECVRRVIGSGRNGLSHFGLVGSAKEMFELLFVGVKCTNDSPQNRPNMKEVLAMLIKIFNSHRNSNY* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4629 1097 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 20 1091 - -
Psa5g4629 1097 Gene3D Ribonuclease Inhibitor 429 534 IPR032675 -
Psa5g4629 1097 SUPERFAMILY L domain-like 358 694 - -
Psa5g4629 1097 SUPERFAMILY Protein kinase-like (PK-like) 802 1085 IPR011009 -
Psa5g4629 1097 Gene3D Ribonuclease Inhibitor 574 727 IPR032675 -
Psa5g4629 1097 ProSitePatterns Serine/Threonine protein kinases active-site signature. 943 955 IPR008271 GO:0004672|GO:0006468
Psa5g4629 1097 ProSitePatterns Protein kinases ATP-binding region signature. 827 850 IPR017441 GO:0005524
Psa5g4629 1097 SUPERFAMILY L domain-like 67 375 - -
Psa5g4629 1097 Gene3D Transferase(Phosphotransferase) domain 1 902 1096 - -
Psa5g4629 1097 Pfam Leucine Rich repeat 384 398 IPR001611 GO:0005515
Psa5g4629 1097 Pfam Leucine Rich repeat 215 231 IPR001611 GO:0005515
Psa5g4629 1097 Gene3D Phosphorylase Kinase; domain 1 788 900 - -
Psa5g4629 1097 ProSiteProfiles Protein kinase domain profile. 821 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4629 1097 SMART LRR_typ_2 167 190 IPR003591 -
Psa5g4629 1097 SMART LRR_typ_2 383 407 IPR003591 -
Psa5g4629 1097 SMART LRR_typ_2 455 479 IPR003591 -
Psa5g4629 1097 SMART LRR_typ_2 121 145 IPR003591 -
Psa5g4629 1097 SMART LRR_typ_2 310 334 IPR003591 -
Psa5g4629 1097 Pfam Leucine Rich Repeat 288 307 IPR001611 GO:0005515
Psa5g4629 1097 Pfam Leucine rich repeat N-terminal domain 49 92 IPR013210 -
Psa5g4629 1097 Pfam Protein kinase domain 821 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4629 1097 Gene3D Ribonuclease Inhibitor 47 187 IPR032675 -
Psa5g4629 1097 ProSiteProfiles Leucine-rich repeat profile. 147 168 IPR001611 GO:0005515
Psa5g4629 1097 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 20 1091 - -
Psa5g4629 1097 SMART serkin_6 821 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4629 1097 Gene3D Ribonuclease Inhibitor 259 371 IPR032675 -
Psa5g4629 1097 Gene3D Ribonuclease Inhibitor 372 428 IPR032675 -
Psa5g4629 1097 Gene3D Ribonuclease Inhibitor 188 258 IPR032675 -
Psa5g4629 1097 CDD STKc_IRAK 827 1088 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4629 Psa-Chr5 409614153 409618158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4629 98 1085 Receptor kinase-like Gene Family AT1G55610 33.852 2.58e-144 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Psa5g4629 Pkinase 7.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4629 - - mtr:MTR_3g437630 1880.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4629 5 409614153 409618158 Psa5g4629 5 409614153 409618158 ECH