Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4608 ATGTCTCATTCTTATACAAGTATGTTCTACACTTTGATATTCTTAATTGCATTCTTCACTTCTGTTGTAGAGATTACTAATGGAGAGGTTACTGCTAATGTGATTGTTGCTGCTGATGGAAGTGGAAAATATACTAGAGTGATGGAAGCTGTAAATGCAGCACCTGATAATAGCATGACACGTTATGTAATATTTATAAAGAAGGGAATTTACACAGAAAAGGTTTTTATCAATGAAAAAAAGTGGAATCTGACTATGATCGGAGAGGGTATGGGTGTCACAGTCATAATTGGTAACATGAATTGCGGTCAAAATAAATCATATGAATGTACTTATGACTCCGCTACCTTTGCTGTGAGCGGTCCAAGATTCATAGCACAAGACATTTCTTTTTGGAACACTGCTGGTCCAGACAATTACCAAGCTCTGGCACTCAAATCTGACTCCGACTTCTCTGTCTTTTATAGAGTTGAGATTTCTGGTTATCAAGATTCTTTATGTGTCAACACGAATCGTCAATTTTATAGAGAATGCAAAATTTGGGGTACTGTGGACTTTATCTTTGGATATGGTACTGCAGTGTTTCAAAATTGTACAATATTAGTTAAAAAAGGGTTACATGGACAAGAAAACACAATCACTGCTCAAGGAGGATACCTAGGAGTATCAAGTGGATTTTCGTTTCAATTCTGCAACATATTAGCGGACCATGATCTTTTACCCTTAATTAATTCAACCTCAACATATCTTGGTAGACCATGGAAGCCAAATGCTAGAACAATTTTCATGCAATCATATATAAGTAATGTGTTGAGTTCGGAAGGGTGGTTAGAGTGGAAAGGTGCCCCCGAATACTTAGATACATTGTTTTTTGCAGAATATATGAACTATGGGCCAGGAGCTGAAACAAACAAGCGAGTGAAATGGTCAGGTTACCATTTGTTGAATTCTAATCAAGCTAAAGACTTCACGGTGGCCAACTTTATTTTAGGAGATCAATGGTTACCTTCAACGGGAATACCGTATACTAGTGGGTTAGTGAATTAG 1047 0.3706 MSHSYTSMFYTLIFLIAFFTSVVEITNGEVTANVIVAADGSGKYTRVMEAVNAAPDNSMTRYVIFIKKGIYTEKVFINEKKWNLTMIGEGMGVTVIIGNMNCGQNKSYECTYDSATFAVSGPRFIAQDISFWNTAGPDNYQALALKSDSDFSVFYRVEISGYQDSLCVNTNRQFYRECKIWGTVDFIFGYGTAVFQNCTILVKKGLHGQENTITAQGGYLGVSSGFSFQFCNILADHDLLPLINSTSTYLGRPWKPNARTIFMQSYISNVLSSEGWLEWKGAPEYLDTLFFAEYMNYGPGAETNKRVKWSGYHLLNSNQAKDFTVANFILGDQWLPSTGIPYTSGLVN* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4608 348 Gene3D - 27 346 IPR012334 -
Psa5g4608 348 ProSitePatterns Pectinesterase signature 2. 180 189 IPR033131 -
Psa5g4608 348 SUPERFAMILY Pectin lyase-like 31 345 IPR011050 -
Psa5g4608 348 PANTHER PECTINESTERASE 29 346 - -
Psa5g4608 348 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 29 346 - -
Psa5g4608 348 Pfam Pectinesterase 33 332 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4608 Psa-Chr5 407972778 407974142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4608 26 346 Carbohydrate Esterase AT4G33220 57.585 6.97e-127 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4608 K01051 - gmx:100798620 407.527