Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4600 ATGGGTGAGGTGGTGGTGAATACTTCGATGCAGAGCAATAGTGATAAATGGGACAAGTTTCTTCCTCCGACTATGCTTAGGGTCTTGCTCGTTGAGCCTGATGATTCTACTCGGCACATTATTTCAGCACTTCTTCGTAAATGCGGTTATAAAGTTGCTGCGGTTCGAGATGGCTTAAAGGCATGGGAAACATTGAAGAACAAATCATGTGATATAGATATTGTATTAACAGAAGTGGATGTGCCATCCATATCTGGTTTTTCATTACTTACTTCAATCATGGAGCATGACAATTGCAAAAAAATTCCTGTCATAATGATGTCTTCTCACGATTCAGTTAGCACGGTGTTCAAATGTATGCAAAACGGGGCCGTTGATTTTCTCATTAAACCTGTTCGCAGGAATGAGCTAAGGAACCTGTGGCAGCATGTGTGGAGAAGACATACTATTAGCATGCCTCCTCAAAATATAACATTTCCACATGATAAACTTGACATTGCTGAAGAAAACAATACTGCAAGCAATAACTCTAGTGGTTCCGTGGCTTCCACGCAGAAAAATATCGAGTGCAATGGAAAAAATAGTGAGGCTCAAGCTCAAGATATCTCCCAGCTGAATAGTTCTTCGAGTTTGAGCAATACAGACCCGGTGAAGCACGAAAATTCTACCAAATATGAATGGGAGTCTACCGAGTATAACAACGAAACTGGAGAGAAATCAACTTTAACAGCACCTAAAGCTGCAAGGTGTGGCAAAATTTCAACAGGTTTAAGGCTTGGTCAAAGCTATGAATATAATGAAACAGACGACCAAGATGAAGAAGGGTTAAGAACAAAGTTAGGCAAAGCCAATCCTCATGTTAATACAAGGATTCATCGACGCGATGATGAACTAGAAGAACATTCTGCTGGAGCTATTGACTTGATGGCTACTTTTGAGAATCTTCCTAAGAACAGTTATGCAGATTGTAGTTTCAATGGTGGCAACTCAGCCAAGTTTGAATATGATACACAATTGGAACTTTCATTACAAAGAGATTATCCTGGCAGCTCATCTAAAACTACCGATGAGGAAAGGCAAATATTGAATCATTCAAATGCTTCTCCATTTTCTCGGTATGGCAACGGTATGATGTTGCAGCCTTTATTTCCAACAAATAATTCTTATGAATCACAAAAATTATCTGAAAATACAAATACTACTTATCAGTGTGATGGAAAAAACCAAAAAGAGGAAAGTAACACCAATCTGGTGATTGGTCAGTCTGTACAAGTTGATGCAAAATTTCTTAACAGTCAACATGAATTCTTTCCAGCCACCACCGGGGACACTTCTGATAACAAATCTATGGAACATGATAATGTTTTTCATTCTATAAGCAATGCACAATCAGGCATGAATCCCACATGTACACCTAAATCAATGTTCCAAAAAGAAAGTTCTCCATTTCCCACTAGTATTTCCTCCCATTCCAATCCTAAAAGTCAGAACTCAGAAGCTCATCAATGGTCGGATGACACCACCTATACTTGTGATCGAAACAAAAATGATCAAAGCAATATTGATTGTGCTATGCATGACTCTCCATTAACGGTCAAATTGTGGTACTTAGCGTTTACAGATCAGAAAATCGAAACACTAGTTGGTGTATCTGAAGGCACAGGCAGCCGGAGTGATGGAAATACCCCTCAGTCTGTTGTAGGCAAGAACCACCTTGAAAGTTCTATTAGTAATGATCACTATGACGAGCCTAGAGGCGCAAATTCTTACCACACCAGCCAAAGAGAAGCAGCTCTACTAAAGTTTCGACTGAAGAGAAAAGACAGATGCTACGATAAAAAGGTCCGATATGAAAGCCGGAAAAGACAGGCAGATAAACGTCCACGGGTGAAAGGGCAGTTTGTTCGCCAAGTACAAAGTGAACTTGCGGTATTGACCGGAGGTTACTGA 1950 0.3995 MGEVVVNTSMQSNSDKWDKFLPPTMLRVLLVEPDDSTRHIISALLRKCGYKVAAVRDGLKAWETLKNKSCDIDIVLTEVDVPSISGFSLLTSIMEHDNCKKIPVIMMSSHDSVSTVFKCMQNGAVDFLIKPVRRNELRNLWQHVWRRHTISMPPQNITFPHDKLDIAEENNTASNNSSGSVASTQKNIECNGKNSEAQAQDISQLNSSSSLSNTDPVKHENSTKYEWESTEYNNETGEKSTLTAPKAARCGKISTGLRLGQSYEYNETDDQDEEGLRTKLGKANPHVNTRIHRRDDELEEHSAGAIDLMATFENLPKNSYADCSFNGGNSAKFEYDTQLELSLQRDYPGSSSKTTDEERQILNHSNASPFSRYGNGMMLQPLFPTNNSYESQKLSENTNTTYQCDGKNQKEESNTNLVIGQSVQVDAKFLNSQHEFFPATTGDTSDNKSMEHDNVFHSISNAQSGMNPTCTPKSMFQKESSPFPTSISSHSNPKSQNSEAHQWSDDTTYTCDRNKNDQSNIDCAMHDSPLTVKLWYLAFTDQKIETLVGVSEGTGSRSDGNTPQSVVGKNHLESSISNDHYDEPRGANSYHTSQREAALLKFRLKRKDRCYDKKVRYESRKRQADKRPRVKGQFVRQVQSELAVLTGGY* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4600 649 Pfam CCT motif 595 637 IPR010402 GO:0005515
Psa5g4600 649 SUPERFAMILY CheY-like 24 152 IPR011006 -
Psa5g4600 649 ProSiteProfiles Response regulatory domain profile. 27 145 IPR001789 GO:0000160
Psa5g4600 649 PANTHER TWO-COMPONENT RESPONSE REGULATOR 200 627 IPR045279 GO:0009736
Psa5g4600 649 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 194 IPR045279 GO:0009736
Psa5g4600 649 Gene3D - 26 248 - -
Psa5g4600 649 PANTHER PRR RESPONSE REGULATOR 200 627 - -
Psa5g4600 649 PANTHER PRR RESPONSE REGULATOR 16 194 - -
Psa5g4600 649 MobiDBLite consensus disorder prediction 477 505 - -
Psa5g4600 649 ProSiteProfiles CCT domain profile. 595 637 IPR010402 GO:0005515
Psa5g4600 649 MobiDBLite consensus disorder prediction 196 218 - -
Psa5g4600 649 MobiDBLite consensus disorder prediction 196 240 - -
Psa5g4600 649 Pfam Response regulator receiver domain 28 139 IPR001789 GO:0000160
Psa5g4600 649 MobiDBLite consensus disorder prediction 346 369 - -
Psa5g4600 649 SMART REC_2 26 141 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4600 Psa-Chr5 407506973 407511905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4600 562 643 Response Regulator Gene Family AT5G24470 57.647 5.49e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Psa5g4600 Response_reg 2.7e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4600 K12130 - gmx:100779346 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4600 5 407506973 407511905 Psa5g4600 5 407506973 407511905 ECH