Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4587 ATGCAATCCATGCTCAAAGAATGTCACAAGCATCTCTCCGGTCTCGACGAAGCCGTTCTCAAAAACACCGATGCCTGTAACCAACTCTTCACCATCACTCGCACTTCCCTCGGCCCCAACGGGATGAATGAGATGGTTACAAATCATTTGGATAAACTTTTTATGACGAATGATGCTGCTACGATTGTGAATGAACTTGAAGTTCAACATCCTGCTGCTAAGATTTTGGTGTTGGCTAGTAAGGCTCAGCAAGAGGAAATCGGTGATGGTGCTAATTTGACTATTTCTTTTGCCGGCGAGTTGCTTCATGGTGCCGAGGAGCTTATTAGGATGGGTTTGCATCCTAGAAGACCTCAGGGAGATTCTTTTGAACCATTGACTGTCAAGCAGGGGAAGAAGCACATTAGCATACCCGTTCCTCATGATTCATACTCGGTTCTTCCTGTAAGCAATTCAGGAAAGTATTTAGCAATTGTATGGCCAGATATTCCTTGTTTCTCTGTCTACAAGGGTAGTTCATCAAAAAGAGCAAAAGAAGTTGCCGCAGCTGCTGCTGGTTCCTCAGATTCTGTTCAAGTGCGAACCGTGTTGGATGATGGAACATCAAATATACTAATGAGATTTGTTGTTGCACGCAATGAACCAGTCATTGGTTTGCATGGAGGGGCACTGCTTGGTGTTGCCTATCGGACATCTAGAAGAACCAGTCCAGTAACAAATGTGGTAGGTTTCAACTCTCAATCGTCCTACGATATGCAATCCATGCTCAAAGAATGTCACAAGCATCTCTCCGGTCTCGACGAAGCCGTTCTCAAAAACACCGATGCCTGTAACCAACTCTTCACCATCACTCGCACTTCCCTCGGCCCCAACGGGATGAATGAGATGGTTACAAATCATTTGGATAAACTTTTTATGACGAATGATGCTGCTACGATTGTGAATGAACTTGAAGTTCAACATCCTGCTGCTAAGATTTTGGTGTTGGCTAGTAAGGCTCAGCAAGAGGAAATCGGTGATGGTGCTAATTTGACTATTTCTTTTGCCGGCGAGTTGCTTCATGGTGCCGAGGAGCTTATTAGGATGGGTTTGCATCCTAGAAGACCTCAGGGAGATTCTTTTGAACCATTGACTGTCAAGCAGGGGAAGAAGCACATTAGCACACCCGTTCCTCATGATTCATACTCGGTTCTTCCTGTAAGCAGTTCAGGAAAGTATTTAGCAATCGTATGGCCAGATATTCCTTATTTCTCTGTCTACAAGGGTAGTTCATCAAAAAGAGCAAAAGAAGTTGCCGCAGCTGCTGCTGGTTCCTCAGCTTCTGTTCAAGTGCGAACCGTGTTGGATGATGGAACATCAAATATACTAATGAGATCTGTTGGTGCACGCAATGAACCAGTCATTGGTTTGCATGGAGGGGCACTGCTTGGTGTTGCCTATCGGACATCTAGAAGAACCAGTCCAGTTATGCAAGAATGGGAATCCATCACCGGACATCACTTATTGGAGCGAGATGGCATGACTGAATTTGTCATGGCACTGTCAAATCCTTTGAAAGGTGAGCGTAAAGCAGGCACCGTTGGCAAACCATTACTTGGTATGCAGGTCAAGATTCTTGCAGATGAGGAGCATGAGAGTGAGGAATCAGGGATTGGCGAGCTTTGCGTTAAAAGCCCTTCATTGTTTACAGAATATTATAAACTTCCTGAGGATGATCCAAGGAATCCAGCTGTTATTGCTGATAATGTTGGTGATATTGCTGGTATGGGATCCGATCTATTTGGTGCGTATGCAGAGGCATCTTGTGCAGCCCTTAGGCTTATCATTGGATTTGTCACTGAATACTATACCGGCGATGCATACAACCCTGTGCAAGATGTTGCTGATTCCTGCAGGACTGGTGCTGCTACCAATGTTATCTTTGGTCTTGCCTTGGGATGCAATATAGCAACCGGAGTAGCCATCGATGCATACGGTCCAATCAGTGACAATGCCGGAGTTGTTGCCGAGATGGCTGGAATGAGTCACAAAATTCGTGAGAGAACCGATGCTCTTGATGCTGCAGGAAACACAACTGCTGCCATTGGAAAGGGGTTTGCTATTGGTTACGCCGCCCTTGTGTCTTTGGCGTTTTTTGGTGCCTTTGTGAGCCATGCTGGTATTACAACAGTTGATGTCCTTACTCCCAAGGTTTTCATTGGTCTGATTGTGGGTGCCATGCTCTCTTACTGGTTTTCTGACCTGACCATGAAGAGTGTTGGAAGCCCAGCATTGAAGATGGTTGAGAAAGTTTGCAGGCAATTCAACACAATTCCCGGATTGATGGAGGGAACTGCGAAACCTGACTATGCCACATGTGCTACAATCACCACCTCAGATCCAGGTCATGGCTCTTGTCTATATCTTGGAAGTTTTGGCAACAAAAATAGCACCTTTGGCAACTTCACAACACCATTAATGAATTCAAATTCCGATTCTTCAGCCTACAACATCCACAACCGCAAATTGAGAATTAAAAGCCTTCTAATGACTGGCTCTGCTCAATCTCCAACCAGTTCGATAGGGAACGAGTATACAACATCTGTTGGAGGAGGAGGTGTCTTTAATTCTTCTCAGAATGCTGTTGATGAGTATGACTTTGGAGACTTCGTCTTTCCTGACAGTGCTGTTTTGAGCTTTGGAAAAGCTCCGAACATTCCTGATATCGTAGAGAGTAGCCGCTACGTTGCCTCTTCACCCGCGATCAGAGTTCGTTACCGTAGCAAGTAA 2769 0.4521 MQSMLKECHKHLSGLDEAVLKNTDACNQLFTITRTSLGPNGMNEMVTNHLDKLFMTNDAATIVNELEVQHPAAKILVLASKAQQEEIGDGANLTISFAGELLHGAEELIRMGLHPRRPQGDSFEPLTVKQGKKHISIPVPHDSYSVLPVSNSGKYLAIVWPDIPCFSVYKGSSSKRAKEVAAAAAGSSDSVQVRTVLDDGTSNILMRFVVARNEPVIGLHGGALLGVAYRTSRRTSPVTNVVGFNSQSSYDMQSMLKECHKHLSGLDEAVLKNTDACNQLFTITRTSLGPNGMNEMVTNHLDKLFMTNDAATIVNELEVQHPAAKILVLASKAQQEEIGDGANLTISFAGELLHGAEELIRMGLHPRRPQGDSFEPLTVKQGKKHISTPVPHDSYSVLPVSSSGKYLAIVWPDIPYFSVYKGSSSKRAKEVAAAAAGSSASVQVRTVLDDGTSNILMRSVGARNEPVIGLHGGALLGVAYRTSRRTSPVMQEWESITGHHLLERDGMTEFVMALSNPLKGERKAGTVGKPLLGMQVKILADEEHESEESGIGELCVKSPSLFTEYYKLPEDDPRNPAVIADNVGDIAGMGSDLFGAYAEASCAALRLIIGFVTEYYTGDAYNPVQDVADSCRTGAATNVIFGLALGCNIATGVAIDAYGPISDNAGVVAEMAGMSHKIRERTDALDAAGNTTAAIGKGFAIGYAALVSLAFFGAFVSHAGITTVDVLTPKVFIGLIVGAMLSYWFSDLTMKSVGSPALKMVEKVCRQFNTIPGLMEGTAKPDYATCATITTSDPGHGSCLYLGSFGNKNSTFGNFTTPLMNSNSDSSAYNIHNRKLRIKSLLMTGSAQSPTSSIGNEYTTSVGGGGVFNSSQNAVDEYDFGDFVFPDSAVLSFGKAPNIPDIVESSRYVASSPAIRVRYRSK* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4587 922 PANTHER CHAPERONIN 253 366 IPR017998 GO:0140662
Psa5g4587 922 PANTHER CHAPERONIN 4 115 IPR017998 GO:0140662
Psa5g4587 922 SUPERFAMILY Acetyl-CoA synthetase-like 486 570 - -
Psa5g4587 922 SUPERFAMILY GroEL equatorial domain-like 10 117 IPR027413 -
Psa5g4587 922 PANTHER BNAC05G47590D PROTEIN 253 366 - -
Psa5g4587 922 PANTHER BNAC05G47590D PROTEIN 4 115 - -
Psa5g4587 922 SUPERFAMILY GroEL equatorial domain-like 261 368 IPR027413 -
Psa5g4587 922 Pfam Inorganic H+ pyrophosphatase 607 648 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa5g4587 922 Pfam Inorganic H+ pyrophosphatase 567 607 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa5g4587 922 Pfam Inorganic H+ pyrophosphatase 650 792 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa5g4587 922 Gene3D - 469 594 IPR042099 -
Psa5g4587 922 Gene3D - 1 118 IPR027413 -
Psa5g4587 922 Gene3D - 246 369 IPR027413 -
Psa5g4587 922 ProSitePatterns Chaperonins TCP-1 signature 2. 55 71 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Psa5g4587 922 ProSitePatterns Chaperonins TCP-1 signature 2. 306 322 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Psa5g4587 922 Pfam TCP-1/cpn60 chaperonin family 31 116 IPR002423 GO:0005524
Psa5g4587 922 Pfam TCP-1/cpn60 chaperonin family 282 367 IPR002423 GO:0005524
Psa5g4587 922 Pfam AMP-binding enzyme 488 570 IPR000873 -
Psa5g4587 922 PRINTS Tailless complex polypeptide 1 (chaperone) signature 31 47 IPR017998 GO:0140662
Psa5g4587 922 PRINTS Tailless complex polypeptide 1 (chaperone) signature 53 71 IPR017998 GO:0140662
Psa5g4587 922 PRINTS Tailless complex polypeptide 1 (chaperone) signature 83 102 IPR017998 GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4587 Psa-Chr5 405644625 405649856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4587 602 785 Primary Pumps ATPases AT1G15690 72.398 1.41e-90 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4587 K23025 - pop:18111071 304.679