Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4577 ATGGCGCTGTTCCGAAGATTATTTTACCGGAAGCCGCCGGATCGTCTTCTCGAGATCTCTGAGAGAGTATATGTTTTCGATTGCTGCTTCTCTACGGACGTCTTGGAAGAAGATGAGTACAAATTGTATATGGGGGGAATTGTAGCTCAGCTACAAGATTACTTTCCAGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGGATAGGCGCAGCCAAATTTCAGACATATTATCTTTATGTGACATGACAGTTATGGAGTACCCTCGGCAATACGAGGGCTGTCCACTTCTTCCTCTAGAGATGGTTCATCACTTCCTTCGATCAAGTGAAAGCTGGCTGTCTTTGGAGGGGCAACAAAATGTGCTTTTGATGCACTGTGAAAGAGGGGGTTGGCCTGTGCTGGCATTTATGTTAGCCGGTCTTTTATTGTTCCGAAAACAATATAGTGGGGAGCTGAAGACTCTTGAAATGGTCTACAAGCAAGCACCCAGAGAACTTCTCCAGCTTTTATCTCCTTTGAACCCACAACCTTCTCAGTTAAGATATCTTCATTATATTTCTAGGAGACATTTGGGTTCTGAGTGGCCTCCGTCAGACACACCTTTATATTTAGATTGTTTAATTCTAAGAGTTCTTCCATTATTTGATGGTGGGAAAGGTTGCAGACCCGTTGTAAATGTTTATGGTCCGGACCCTTCAAATCCTGCCAATAGAAGTTCTAAGCTTCTTTTCTCAACTTCAAAAGTCCAAAGTCATGTTCGCCACTACCTGCAGGCAGAGTGTATGCTCGTGAAAATTGATATTCGTTGTCGTGTTCAAGGGGATGTCGTTCTTGAATGCATACATTTAAGCGAAGATTTTGTTCGTGAAGAGACGATGTTTAGAGTCATGTTTCATACTGCATTTATACGGTCAAATATTTTGGTGCTGAGCCGTGATGAAGTCGATATACTGTGGGATACAAAGGATCAGTTCCCCAAGGATTTTAAATCTGAGGTGCTTTTTTTGGATGCTGATGCTGTTATACCTAATCTAACCACAGTCAATGTGAGTGAAGAAGATGAAAATGAGACAGAAAGCGGTTCACCTGACGAATTCTATGAAGTGGAAGAGATTTTCAGCAATGTCATTGATGCACAGGATTCTCCAAAGTTTCCTCAAAATGCAGTAGATGATGGAAGCCATAAAGATGTCTGGAAAGAGTATTCAGATCCTCTTACTTTTCAGGATTCTACCCCAGATGATGGGATTGACCAACAGGTTGAATGGACAGATTCTGTTATTAATGAGGTGAAAGACATCACCGTTGATGATGTGAAATACAAGCTTGATGAGCGTGTAGATTCAGATACTCATGCAGTGAAAGATATTGCTGTGGATGGTGGAGAAAATAAGTTAACTTCCAGTGCTGTTACTTTTGATATGATGGAAACCCCGGAGAGACAGGAAGATGTTCATGATGAGTTAGCAGTTATGCGAAACAATTATGATGAAGATAACAATACAACACTTAAAGAGTTAGAGCCTGAGGAAGGGCAGCAGATGCATGATCTTGCCGGATCAATATCTGTTGAAACGAAACAAGTTCCTTCGGGCTCAAAGCCAGTGGGAGACGTAGTTGCAGAAAAGCAAAAGGCTAAACAGAAAGAACAACGGGGATTTCAGGAAAAACAAGCAAAAGAAAGTGCATCAACTAGGTGGATACCTTCTAACAAAGGTTCTTATCAAGATTCAATGCATGTTTCATATCCACCGACAAGGCATAATAGTTTACCACCTGTTCTGTCAAATGCTTCCTCTCCAAAGGAGAAAATGACTAAGGCCAAAGGAAGACGTGTTTCTAGTTCGACAAATGATCTGAAAAGTTGTAATGGGGACAATTCAACATCTTTAGAAAGCATCTGGGAAACTGACTCAAACGCCCAGCTATCATCATTAATGCCAATTACAGAGTCATCTCATCAGTCAGCTACTCAAGCACCACAGTTGAGCACTGATCAAGTGCTACAACCTCATCTCCCCCCACCTCCAGGCATATCACCATCTTCTTCCTTGGACGGTAAAGTGTCTACAGTACCGCAACCGCCCCCTCAACCACCTCCACAGCCACCAGCACCACCTCCACCTTTTTTGTCAGGTTTTGGTAAGAAAAATGAAGAGACGGACTTACAAGCTGCAACTCATCCTCCTCCACCCCCACCTCCTCCTCCATTTTCTAGGCAAAACAGAGGGAGCTCAGTACCTCTTTCTACTCACAGGAAGCCCTATTATTCATCAATCGGTGTAGTTGGAGAAAATGGTGGTGCTTTACCTCCTTCAACTCCTATAGTAGGAAGTGTAATTACATCAAAAGTTTCTAAATTAGTTGATGCAGTCTCTCTTCTCATTCCTCCTCCACCCCCACCTCCACCCCCTTCTTCTCTCCCCCCAAAATATGGAGTTACATCCATTCCTCCCACATCCATTCCTCCCCGCACCTCCCCCACCTTCTTTGCCTTATATGGATAG 2511 0.4297 MALFRRLFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKLYMGGIVAQLQDYFPDASFMVFNFREGDRRSQISDILSLCDMTVMEYPRQYEGCPLLPLEMVHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLFRKQYSGELKTLEMVYKQAPRELLQLLSPLNPQPSQLRYLHYISRRHLGSEWPPSDTPLYLDCLILRVLPLFDGGKGCRPVVNVYGPDPSNPANRSSKLLFSTSKVQSHVRHYLQAECMLVKIDIRCRVQGDVVLECIHLSEDFVREETMFRVMFHTAFIRSNILVLSRDEVDILWDTKDQFPKDFKSEVLFLDADAVIPNLTTVNVSEEDENETESGSPDEFYEVEEIFSNVIDAQDSPKFPQNAVDDGSHKDVWKEYSDPLTFQDSTPDDGIDQQVEWTDSVINEVKDITVDDVKYKLDERVDSDTHAVKDIAVDGGENKLTSSAVTFDMMETPERQEDVHDELAVMRNNYDEDNNTTLKELEPEEGQQMHDLAGSISVETKQVPSGSKPVGDVVAEKQKAKQKEQRGFQEKQAKESASTRWIPSNKGSYQDSMHVSYPPTRHNSLPPVLSNASSPKEKMTKAKGRRVSSSTNDLKSCNGDNSTSLESIWETDSNAQLSSLMPITESSHQSATQAPQLSTDQVLQPHLPPPPGISPSSSLDGKVSTVPQPPPQPPPQPPAPPPPFLSGFGKKNEETDLQAATHPPPPPPPPPFSRQNRGSSVPLSTHRKPYYSSIGVVGENGGALPPSTPIVGSVITSKVSKLVDAVSLLIPPPPPPPPPSSLPPKYGVTSIPPTSIPPRTSPTFFALYG* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4577 836 PRINTS Proline rich extensin signature 586 602 - -
Psa5g4577 836 PRINTS Proline rich extensin signature 694 710 - -
Psa5g4577 836 PRINTS Proline rich extensin signature 721 738 - -
Psa5g4577 836 PRINTS Proline rich extensin signature 799 824 - -
Psa5g4577 836 Gene3D - 205 336 - -
Psa5g4577 836 MobiDBLite consensus disorder prediction 527 753 - -
Psa5g4577 836 MobiDBLite consensus disorder prediction 693 712 - -
Psa5g4577 836 MobiDBLite consensus disorder prediction 612 670 - -
Psa5g4577 836 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Psa5g4577 836 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Psa5g4577 836 SMART PTEN_C2_2 198 338 IPR014020 -
Psa5g4577 836 MobiDBLite consensus disorder prediction 541 560 - -
Psa5g4577 836 MobiDBLite consensus disorder prediction 561 604 - -
Psa5g4577 836 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Psa5g4577 836 PANTHER FORMIN-J 1 818 - -
Psa5g4577 836 MobiDBLite consensus disorder prediction 727 742 - -
Psa5g4577 836 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Psa5g4577 836 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4577 Psa-Chr5 404809941 404813927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4577 1 623 FH2 protein (formin) Gene Family AT5G07740 59.783 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4577 - - cam:101505448 1135.94