Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4556 ATGGAACTCACAGAAGAACAACTAAAACAAATCGAAGCGAATCGCATTGCCGCATTAGCAAAACGAAAAGCTTTCTTAGAATCCACTTCTCAACAACCTCAACGAAACCCTTGGCACCTTTTCAAATGCCAAAAAATCTCTCAACCCCAACCCCTTCAACCCAAACCCCAACTCATTCAACCTAATCCCCAACCCGATATCAAATTCCTCGCAAGGCTCGAAGTTTGTTCTCCCGATTCCTTCACAATTACCCCTCTCCCTCTCCCCAATTTCCGTTTTCCAACCTTCGGTACTTGCTTCCAAATCCTCAACAACATTCTCTCCCAAGTGGATGTGGATCCGTCGCATTTTACTCAGACGAGTGATGGCGGGAAAGCCTGCGTGCTCAAATTGGCGGACTACCGTACTGTTTTGAAGCAGTTAAAGGCGGGGGTTGAGGTGGAGGAGATTCCTTGGACCACTTTTAATGTTGTTGAGAAGCTTTCTCGTTCCGTGGGGAGGTGGACTCCGGTGAGGCCTGAGCATTTGAGTGATGAGGTAGTTGATGATTTGATTAGGAAGTTGCCTAAGAGTTTAGTTGATGTGTTGTTGCCGTTTCAAATGGATGGTTTGAGGTTTGCTCTTAGGAGAGGTGGTCGCTGTCTCATTGCTGATGAAATGGGACTTGGGAAGACATTGCAGGCTATTGCTATTGCAGGATGTTTCATGGATGAAGGAGCTATACTTGTTGTTTGCCCTGCTGTTTTGCGGTATTCATGGGCTGAAGAAATTGAGCGCTGGTTTCCTTCCTGCCTGCCTACCGATATTCATCTCGTTTTTGGCCACCAAGACAACCCTGTATATCTAACCAGATGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAGCGTAAGTGGGCTCTTATGATTGTTGATGAATCTCATCACGTGCGTCCTTCAAAAAAAACCTCAGAACCCGGAGAGATAAAGGCTGTTCTTGACGTGGCTTCGGAAGTCAAGCGTATAATTCTGCTATCAGGGACACCTTCTTTGTCAAGACCGTTTGACATATTTCATCAGATAAATATGTTATGGCCGGGTTTGCTGGGGATAACCAAATATGAGTTTGCAAAAACTTATTGTAATCTCAAATATATCAAGGGTGTCCAAGGAAAATATTTTGCGGATTATTCGAAGGGCATTCGCTTGGAGGAGTTGAATGTGTTACTAAAGCAAACTGTTATGATAAGGCGCCTCAAGGAACAAGTGTTGCAACAGTTACCTCCAAAACGAAGGCAGATTATAAGAATGTCGCTAAAGAGATCAGATATAGTTTCCGCGAAAACTGCAGTTGGAGTAATGAAAATTGATGACTCTGAAAATGCTAGTGAAGATATGCCTTTGGAAAGTTTTGACGAACATGATGGGAAGCTTACTAATCAAGAACTTGGAATTGCAAAGCTATCTGGGTTTTGTGAATGGCTTTCCTTCCATCCACTCATTGCAGGATCAGATAATGCTCCAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTATATGTGAGAAAGGAGTAGGTTTTGTGCGAATAGATGGACTTACACTACCCAGAGATAGACAGTCTGCAGTAATCTCATTTCGATCATCACCAGAGGTTAAAATTGCGATAATAGGTGTTCTAGCAGCAGGTTTTGGAGTTGATTTCTCAACAGCACAGGATGTTGTCTTTTTGGAGCTACCTCAGTGCCCAACAGTGATGCTTCAGGCTGAGGACAGAGCTCATCGACGGGGGCAAACAAATGCAGTTAACATATACATATTCTGTGCAAAGGATACTTCGGATGAATCACATTGGAAATATTTGAACAAAAGTTTACATCGCGTTTCATCTACAACAGATGGCAAATATGATGCCGTGAAGGAGATAGAGGTTGAAGGTGTTTCTTATTTAGACCCATCCTTGAAAATTGACAGACCTAAAAAACAATCTGCATCCAAAGATGCATCAGCTGAAACACATTTAGATAGACAACCCTCTGCAGTGAAGTCAAATGAAACAGAAGCAAATCAAGAAGATGAATCTGGTCTTGTAAACAACATATCTCAGGATGCTAATATTATGGTTGATAGTGTCTCCTTCCTAGATTTATGCAACGCTTCAGTTTTGGATGGAAATCTTGATGTAGATGCTTTTAATGCTAAGGATAGATGTTCTGAAGAGAGTTCCGAGGACAAAGATAAAGTAATAGAGGATAAGAAATCAACTTTAACAACAGACGCAGATGATGACCAGCCCTCTCATCCTGTTGAAGCTGAAGTAAAGTGCTCTCATCAAGTTAATTCTCTGCGGTTTGAGGTGAGCCCATACACCGGAAGGATCCACCTCTATACTTGTGTTTTGGGTAAAGATGCAAGACCACAGCCACTTTATGAAAATTTCCGACCAGAAGACCTTGAGCTGCTGAGTCCTGCTGATGATGATGAGAAAAAGGGTATAGAGTTTGCATCTGTCAAAGATAACCCTGCGTATAGGACTGCTCTTCTGGATTTTGCAAATGAGTGGAAGAGTTTAAGATCAATTGAACGCAATAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTCGAACTGTGCTGCTTAAATGAAAGTAATAGTCACAACAAGAAGGGATTAATAAATGGTGGAAGCAAACGGCGCATGACTCCTTTAGTTGACATCAGCTATCCCTTACCATCAGATGCTGTTTGGAAACAGGTTTGTCTTCGAAGCGGTTGTGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGTCCGAAAGACGAGCCTCTTTGTAAGCTTTGTCAAAAGCAATGCATGGGTAATAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATCAAGAGTATCGCATGAGAACTAGCAACAGATTCATCCGTCAGGAACTTTTCAATATTGAGCAAGGTGTATGCACAAATTGCCAATTGGACTGTCATAAGCTTGTCGTGCACATAAGACCTCTGTCCTTGGAAAAACGACGGGGGTACATTGAAAAATCAGCACCAAATATTGCAAAGCGAAGGAAGATGTTTGAAAAGCTTGCCAAAGATCCAAGTGAAGGAAATGCATGGCATGCTGATCACATTGTTCCAGTATATAAAGGCGGAGGTGAATGCAAACTTGAGAATTTGAGAACTCTTTGTGTGGCCTGCCATCATGATGTTACTGCCGAACAATGTGCTGAACGGCGCATTATAAGAGCAGATGCCCGGAAACAACTAAAAGCATTGATGGATACCATGAAAAATAATATGAAGGGTGCTGCTGGGACTAATATTGAGGACCAACTGCTTCACGGGGAACAAGAAAATATGCATGAGGATGATATTTTAGTCCAGGTTCCTGGAAGTGCTTATGCGGTAGCAAATTATCAAGAAAGCGGAGATGCAGCCTGTTAA 3504 0.4212 MELTEEQLKQIEANRIAALAKRKAFLESTSQQPQRNPWHLFKCQKISQPQPLQPKPQLIQPNPQPDIKFLARLEVCSPDSFTITPLPLPNFRFPTFGTCFQILNNILSQVDVDPSHFTQTSDGGKACVLKLADYRTVLKQLKAGVEVEEIPWTTFNVVEKLSRSVGRWTPVRPEHLSDEVVDDLIRKLPKSLVDVLLPFQMDGLRFALRRGGRCLIADEMGLGKTLQAIAIAGCFMDEGAILVVCPAVLRYSWAEEIERWFPSCLPTDIHLVFGHQDNPVYLTRCPRVVVISYTMLHRLRKSMLERKWALMIVDESHHVRPSKKTSEPGEIKAVLDVASEVKRIILLSGTPSLSRPFDIFHQINMLWPGLLGITKYEFAKTYCNLKYIKGVQGKYFADYSKGIRLEELNVLLKQTVMIRRLKEQVLQQLPPKRRQIIRMSLKRSDIVSAKTAVGVMKIDDSENASEDMPLESFDEHDGKLTNQELGIAKLSGFCEWLSFHPLIAGSDNAPKMIIFAHHHKVLDGVQEFICEKGVGFVRIDGLTLPRDRQSAVISFRSSPEVKIAIIGVLAAGFGVDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNIYIFCAKDTSDESHWKYLNKSLHRVSSTTDGKYDAVKEIEVEGVSYLDPSLKIDRPKKQSASKDASAETHLDRQPSAVKSNETEANQEDESGLVNNISQDANIMVDSVSFLDLCNASVLDGNLDVDAFNAKDRCSEESSEDKDKVIEDKKSTLTTDADDDQPSHPVEAEVKCSHQVNSLRFEVSPYTGRIHLYTCVLGKDARPQPLYENFRPEDLELLSPADDDEKKGIEFASVKDNPAYRTALLDFANEWKSLRSIERNKLLGKPLQLPLAVELCCLNESNSHNKKGLINGGSKRRMTPLVDISYPLPSDAVWKQVCLRSGCGKKEKEYTQGWSPKDEPLCKLCQKQCMGNNAKTPEYFEDLFCNLVCYQEYRMRTSNRFIRQELFNIEQGVCTNCQLDCHKLVVHIRPLSLEKRRGYIEKSAPNIAKRRKMFEKLAKDPSEGNAWHADHIVPVYKGGGECKLENLRTLCVACHHDVTAEQCAERRIIRADARKQLKALMDTMKNNMKGAAGTNIEDQLLHGEQENMHEDDILVQVPGSAYAVANYQESGDAAC* 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4556 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 657 IPR027417 -
Psa5g4556 1167 Pfam SNF2-related domain 214 451 IPR000330 GO:0005524|GO:0140658
Psa5g4556 1167 Gene3D - 982 1118 - -
Psa5g4556 1167 CDD DEXHc_HARP_SMARCAL1 196 420 - -
Psa5g4556 1167 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1113 - -
Psa5g4556 1167 Coils Coil 1 21 - -
Psa5g4556 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 420 IPR027417 -
Psa5g4556 1167 MobiDBLite consensus disorder prediction 685 704 - -
Psa5g4556 1167 Gene3D - 433 714 IPR027417 -
Psa5g4556 1167 SMART helicmild6 523 606 IPR001650 -
Psa5g4556 1167 CDD HNHc 1041 1091 IPR003615 -
Psa5g4556 1167 CDD SF2_C_SNF 511 617 - -
Psa5g4556 1167 SMART ultradead3 192 388 IPR014001 -
Psa5g4556 1167 MobiDBLite consensus disorder prediction 667 682 - -
Psa5g4556 1167 MobiDBLite consensus disorder prediction 667 704 - -
Psa5g4556 1167 Pfam HNH endonuclease 1057 1091 IPR002711 GO:0003676|GO:0004519
Psa5g4556 1167 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 369 IPR014001 -
Psa5g4556 1167 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 652 IPR001650 -
Psa5g4556 1167 Pfam Helicase conserved C-terminal domain 507 606 IPR001650 -
Psa5g4556 1167 MobiDBLite consensus disorder prediction 744 779 - -
Psa5g4556 1167 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1113 - -
Psa5g4556 1167 Gene3D - 174 417 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4556 Psa-Chr5 402067663 402090449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4556 511 659 RAD5 or RAD16-like Gene Family AT1G11100 33.553 3.50e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa5g4556 SNF2_N 3.8e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4556 K25861 - gmx:100788690 1731.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4556 5 402067663 402090449 Psa5g4556 5 402067663 402090449 ECH