Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4536 ATGGAGCTACCAAATGAAGGTGGAGAAGGATCTTCTCAAAAGAAATTAGGAAGAGGAAAAATCGAAATCAAGAGGATCGAGAACACTACAAATAGACAAGTCACCTTTTGCAAACGCCGCAACGGATTGCTGAAGAAAGCTTATGAATTATCAGTTCTTTGTGATGCTGAAGTTGCTCTCGTTGTCTTCTCGACCCGCGGCCGCTTGTATGAGTATGCTAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCATGTGCTGCTTCTACTAATGCAGAATCTGTATCTGAAGCTAATACCCAGTTTTACCAGCAAGAGTCATCAAAATTGAGAAGACAGATTCGAGATATTCAGAATCTAAATAGACACATCCTTGGTGAAGCTCTTGGATCTTTGAGTCTGAAGGAACTAAAGAATCTTGAAGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACTTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAACTATCTACGAGCTAAGATAGCTGAACATGAAAGAGCTCAACAACAGCAACAAAATTTGATGCCGGAAACAATGTGTGAGTCTTTACCTTCACAGACCTATGACAGAAACTTCTTTCCTGTAAATCTTCTCGGATCGGATCAGCAGGAGTATTCGCGTCAAGACCAAACCGCTCTTCAGCTTGTGTGA 726 0.4077 MELPNEGGEGSSQKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNLMPETMCESLPSQTYDRNFFPVNLLGSDQQEYSRQDQTALQLV* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4536 241 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 12 226 - -
Psa5g4536 241 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa5g4536 241 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Psa5g4536 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Psa5g4536 241 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa5g4536 241 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Psa5g4536 241 Gene3D - 28 100 IPR036879 GO:0003677|GO:0046983
Psa5g4536 241 Coils Coil 175 195 - -
Psa5g4536 241 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Psa5g4536 241 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Psa5g4536 241 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Psa5g4536 241 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Psa5g4536 241 SUPERFAMILY SRF-like 17 93 IPR036879 GO:0003677|GO:0046983
Psa5g4536 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 226 - -
Psa5g4536 241 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Psa5g4536 241 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4536 Psa-Chr5 400490674 400497085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4536 6 241 MADS-box Gene Family AT3G58780 71.660 6.57e-119 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa5g4536 K-box 4.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4536 K09264 - gmx:100808734 431.795