Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4534 ATGCGTTTGGCTAAGTTGAACAAGCCTGAGGTTCCTGTCATACTGCTTGGGAGCCTTGCTGCAATAATACACGGTGTCGTGTTCCCTGTATTTGGCCTCTTGTTTTCATCAGCCGTTGATACGTTTTTTAAACCTCCAGAACGGCAGAGGAAAGAGTCCAGGCTATGGTCACTTCTATATGTAGGTCTGGGTTTGGTAACTCTAGTGGTTTTACCACTTCAGAATTACTTCTTTGCGATTGCTGTTGGAAAACTTATTGAAAGAGTTCGTTCATCGACACTTGAAAAGATTGTGCACCAAGAAATTAGATGGTTTGACGATCCTGCAAATTCAAGAGTTTTGGCTGTCTTTCCCATGGTTCTTATGCAAGGAGTCGTTCAGATCAAGTTTATTAGAGGTTTTAGTGCTGGTGCCAAGGTGATGTATGAAGAGGCAAGTCAAGTGGAAATTGATGTTGTTAGTAGCATAAGAACTGTTGCGTCATTTTGCGCAGAATCAAAAGTGATGGACATGTACCGAAAAAAGTGTTTAAGGCCAGAGATTCCACAGTTTCAATATTTGAAATTCTTGACAACAAACCTGATATTGATTCCAGCAGCAAGGAGGGTGTAA 612 0.4134 MRLAKLNKPEVPVILLGSLAAIIHGVVFPVFGLLFSSAVDTFFKPPERQRKESRLWSLLYVGLGLVTLVVLPLQNYFFAIAVGKLIERVRSSTLEKIVHQEIRWFDDPANSRVLAVFPMVLMQGVVQIKFIRGFSAGAKVMYEEASQVEIDVVSSIRTVASFCAESKVMDMYRKKCLRPEIPQFQYLKFLTTNLILIPAARRV* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4534 203 SUPERFAMILY ABC transporter transmembrane region 2 188 IPR036640 GO:0005524|GO:0016021
Psa5g4534 203 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 113 180 - -
Psa5g4534 203 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 2 111 - -
Psa5g4534 203 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 113 180 IPR039421 -
Psa5g4534 203 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 2 111 IPR039421 -
Psa5g4534 203 Pfam ABC transporter transmembrane region 15 107 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g4534 203 Pfam ABC transporter transmembrane region 113 189 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g4534 203 Gene3D ABC transporter type 1, transmembrane domain 1 197 IPR036640 GO:0005524|GO:0016021
Psa5g4534 203 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 15 117 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4534 Psa-Chr5 400467430 400468188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4534 2 172 Calmodulin-binding Proteins AT2G36910 24.887 2.30e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4534 K05658 - ccaj:109794544 246.899