Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4517 ATGATGGGAAGACCACCTTGCTGTGACAAAATTGGTGTTAAGAAGGGACCTTGGACTCCGGAGGAAGATATAGTTTTGGTATCTTACATTCAAGAACATGGACCTGGGAATTGGAGATCTGTTCCCAATAGTACAGGTTTGATGAGATGTAGTAAAAGTTGCAGACTTAGATGGACTAATTACCTTAGACCAGGTATCAAACGAGGTAATTTCAATGATCATGAAGAAAAAATGATAATTCATCTTCAAGCACTTTTGGGAAACAGATGGGCTGCCATAGCTTCCTATCTTCCACAAAGGACAGACAATGACATAAAAAACTACTGGAACACACATTTGAAGAAAAAGCTAAACAAGATCCAACCAGGGAATAACAATGAAGAAGAAGGAAACTCTTCTTCTCCACAGGTAAAAGGCCAATGGGAAAGAAGGCTTCAAACAGACATCCATACAGCAAAACAAGCTTTATGTGCAGCACTTTCTCTCGACAAATCATCAACACCTCTTTTACCCGAAATCGAAACCACAACACAATTCCCGTATGCATCCAACACTGACAACATAGCTAAATTGCTAGAAAAGTGGATGAAAAAACCTCAAAAAAACTCAGATGATATGGTAGTTACTACAGGTTCAAGTTCTAGTAATGTTGCATGCACACAAAAAGATCAATCAGCTTTTGATTCTTTGTTGAGCTTTAACTCGTTTAATTCTGATTGTTCTCAATCTGTTGAAGAAAGTAACAACTTGACAATGGATTCTTGTTTGTATCAATATGAAAATAAGCCAAACCATGAAACTCAGGTCCCTCTCATGTTCTTGGAGAAATGGCTTTTTGAAGATGGGAATGCTCAGTGCAATGAAGATATAATGAACATGTCATTGCAGGAAAATACATCAGGGTTGTTTTAG 912 0.3772 MMGRPPCCDKIGVKKGPWTPEEDIVLVSYIQEHGPGNWRSVPNSTGLMRCSKSCRLRWTNYLRPGIKRGNFNDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLNKIQPGNNNEEEGNSSSPQVKGQWERRLQTDIHTAKQALCAALSLDKSSTPLLPEIETTTQFPYASNTDNIAKLLEKWMKKPQKNSDDMVVTTGSSSSNVACTQKDQSAFDSLLSFNSFNSDCSQSVEESNNLTMDSCLYQYENKPNHETQVPLMFLEKWLFEDGNAQCNEDIMNMSLQENTSGLF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4517 303 Gene3D - 14 67 - -
Psa5g4517 303 SMART sant 67 115 IPR001005 -
Psa5g4517 303 SMART sant 14 64 IPR001005 -
Psa5g4517 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Psa5g4517 303 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Psa5g4517 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 290 - -
Psa5g4517 303 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Psa5g4517 303 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Psa5g4517 303 MobiDBLite consensus disorder prediction 118 141 - -
Psa5g4517 303 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Psa5g4517 303 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Psa5g4517 303 Gene3D - 69 136 - -
Psa5g4517 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Psa5g4517 303 CDD SANT 70 113 IPR001005 -
Psa5g4517 303 PANTHER - 2 290 - -
Psa5g4517 303 MobiDBLite consensus disorder prediction 118 142 - -
Psa5g4517 303 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4517 Psa-Chr5 394543418 394545459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4517 2 303 MYB Transcription Factor Family AT5G62470 50.681 4.86e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g4517 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4517 K09422 - gmx:100794319 407.912