Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4484 ATGTTATTATTATTATTATTATTATCATCATCATCTCACAAAATGGCCACTCTTTTTTTCTTCCTTCTACTTGGTTCTTTCTTTCCTTCTATTTCTTCACTTTCTTTGAAAAACCAAGCTTCAATCTTAGTTTCAATGAAACAAGATTTTGAACTTTCAAACACTTCTTTACCTTTTAACACATGGAACATTTCTAACTATATCTCACTTTGCACTTGGTATGGAATTCAATGTGACCAAAACAACAATGTTGTTTCACTTGACATATCAAACTTAAATGTTTCTGGTTCACTTTCACCTCTCATCACAAACCTTTCCACTCTAGTGAATCTTTCAATCCAAGGAAATAGTTTCCATGGTGAGTTTCCATCTGAAATTCATAACCTACAAAGCTTGAAATTCCTCAACATATCAAACAATATGTTTAGTGGAAACATGAGTTGGGAGTTTAACAAGTTGAAAGAGCTTGAAGTTCTTGATGTTTACAACAATGCCTTCCATGGTTCACTTCCTCATGGTGTAACTCAGTTGTTGAGGCTTAAGCATTTGAATTTTGGAGGGAATTACTTTTCGGGAAAAATTCCTCAGAGTTATGGTGAAATGAAACTGCTCAACTTTTTGTCTCTTGCTGGAAATGATTTGAGTGGTTTTTTACCTATTGAGATTGGAAATTTGACAAGTTTGGAGTATCTTTATTTAGGTTATTTCAATCAATTTGATGGTGGAATTCCAAGAGAGTTTGGTAAGTTGATTAATTTGGTTCATTTAGACCTAGCAAATTGTTTCTTGAAAGGCTCAATTCCACATGAATTAGGTCAACTTTACAAGTTAGATACACTTTTCTTGCAAACGAATCAACTAACCGGTTTGATTCCGTCTGAATTAGGTAACTTGAGTAGATTGAATGCTCTTGATTTATCACTCAATAACCTAACCGGCGGAATTCCGGATGAATTCTCGAATCTTCGAGAACTTTCTCTATTGAACTTGTTTATCAACAAGTTTCACGGCGAAATTCCTGAGTTCGTCTCCAAGTTTTCTAAATTGGAAGTACTTAAGCTTTGGAGGAATAACTTCACCGGAGTCATTCCTCCGAAGCTAGGTCAGAACGGAAGATTAACCGAAGTTGATTTGTCGACGAATAAACTCACCGGAGTATTGCCGAAATCGCTTTGCTTTGGAAAGAGATTGAAAATCTTGATCTTGCTTAACAACTTTTTGTTTGGTTCTTTGCCTAATGATCTTGGTGAATGCTACACACTCCAAAGAGTTAGAATTGGACAGAACTATTTGACTGGTTCAATTCCACATGGTTTTGTTTATTTGCCAAATCTTTCTCTTTTGGAGCTACAAAACAATTATCTCAGTGGTGTGATTCCACAAGAAAGAGGAAAGAACACAACCTCGAAATTAGAACAGTGTAATCTCTCAAACAATAGGTTATCAGGTTCTTTACCAACCTCAATTGGAAACTTTCCAATTTTGCAAATTCTTCAGCTTAGTGGAAACAGATTCTCAGGTGAAATTCCATCGGATATAGGAAAACTCGTAAATATTCTCAAATTAGATATAAGTAGCAACAACTTTTCGGGTTCTATTCCAATTGAAATAGGTAAATGTACCTTACTAACTTACTTAGATTTGAGTCAAAACCAGTTTTCAGGTCCTATTCCAATTCAACTTGCTCAAATTCATATACTAAACCATCTTAATGTGTCATGGAATCACTTGAACCAAACACTTCCTAAGGAACTTGGAGCCTTAAAGGGCTTAACTTCAGCAGATTTCTCGCATAATAACTTCTCCGGTTCGATACCAGAAGGAGGACAGTTCTCAGCTTTTAAGTCAAAATTCTTTGAAGGTAATCCTCAACTATGTGGATATGAGCTCAATCCATGCAAACTAGATGAATCGGAATCGCAACAAAAAAACAGTTCGAGAAACGGATTTCATGGAAAGTTTAAGCTACTTTTCCCGTTGGCGTTATTGTTTTGTTCATTGGTTTTTGCAAGTTTGGCTATCATCAAGAGTAGAAAATTGAGTAGGGATTCAAATTCATGGAAGCTGACAGCGTTTCAGAAAATGGAATACGGAAGTGAAGAAATCGTCGGTTGTATAAAGGAAAGCAATGTGATAGGAAGAGGGGGAGCTGGTGTTGTTTACAAAGGAACAATGCCAAATGGAGATGAAGTAGCTGTGAAGAAACTACTAGGAATCAACAATGGTTCTTCTTCTCATCAGGATAACGGTTTCTCGGCTGAAATTAAGACGTTAGGTAGAATCAGACACAGGTATATCGTTCGGTTGGTTGCTTTTTGTTCGAACAAAGAAACAAATTTGCTTGTGTATGAGTATATGGAAAACGGAAGTCTTGGTGAAGTTTTGCATGGGAAGAGAGGTGAGTTTTTGAAATGGGATGTTAGGTTGAAAATTGCGGTGGAAGCTGCTAAAGGACTTTGTTATTTGCATCATGATTGTTCTCCTTTGATCATTCATAGAGATGTTAAGGCGAATAATATTTTGTTGAACTCCGAATTCGAGGCTCATGTTGCTGATTTCGGACTTGCTAAGTTCTTGCAAGATAATGGGAATTCCGAATGCATGTCTTCTATTGCTGGTTCCTATGGATATATCGCTCCAGAATATGCATACACTTTGAAAGTTGATGAGAAAAGTGATGTGTATAGTTTTGGAGTGGTGCTTTTAGAGCTCATAACGGGGAAAAGGCCGGTAGGAGATTTTGAAGAAGAAGGATTGGACATTGTTCAATGGACCAAAATGAAAACCAATTGGAACAAGGATATGGTGATGAAGATACTTGATGAGAGGCTAGCTCAAATTCCTTTAGATGAAGCAAAACAAGTGTTTTTTGTGGCAATTTTATGTGTCCATGAACATAGTGTGGAGAGACCAACCATGAGGGAAGTGGTTCAAATGCTTGCACAAGCAAAGTAA 2955 0.3662 MLLLLLLLSSSSHKMATLFFFLLLGSFFPSISSLSLKNQASILVSMKQDFELSNTSLPFNTWNISNYISLCTWYGIQCDQNNNVVSLDISNLNVSGSLSPLITNLSTLVNLSIQGNSFHGEFPSEIHNLQSLKFLNISNNMFSGNMSWEFNKLKELEVLDVYNNAFHGSLPHGVTQLLRLKHLNFGGNYFSGKIPQSYGEMKLLNFLSLAGNDLSGFLPIEIGNLTSLEYLYLGYFNQFDGGIPREFGKLINLVHLDLANCFLKGSIPHELGQLYKLDTLFLQTNQLTGLIPSELGNLSRLNALDLSLNNLTGGIPDEFSNLRELSLLNLFINKFHGEIPEFVSKFSKLEVLKLWRNNFTGVIPPKLGQNGRLTEVDLSTNKLTGVLPKSLCFGKRLKILILLNNFLFGSLPNDLGECYTLQRVRIGQNYLTGSIPHGFVYLPNLSLLELQNNYLSGVIPQERGKNTTSKLEQCNLSNNRLSGSLPTSIGNFPILQILQLSGNRFSGEIPSDIGKLVNILKLDISSNNFSGSIPIEIGKCTLLTYLDLSQNQFSGPIPIQLAQIHILNHLNVSWNHLNQTLPKELGALKGLTSADFSHNNFSGSIPEGGQFSAFKSKFFEGNPQLCGYELNPCKLDESESQQKNSSRNGFHGKFKLLFPLALLFCSLVFASLAIIKSRKLSRDSNSWKLTAFQKMEYGSEEIVGCIKESNVIGRGGAGVVYKGTMPNGDEVAVKKLLGINNGSSSHQDNGFSAEIKTLGRIRHRYIVRLVAFCSNKETNLLVYEYMENGSLGEVLHGKRGEFLKWDVRLKIAVEAAKGLCYLHHDCSPLIIHRDVKANNILLNSEFEAHVADFGLAKFLQDNGNSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGKRPVGDFEEEGLDIVQWTKMKTNWNKDMVMKILDERLAQIPLDEAKQVFFVAILCVHEHSVERPTMREVVQMLAQAK* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4484 984 Gene3D Transferase(Phosphotransferase) domain 1 786 984 - -
Psa5g4484 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Psa5g4484 984 Gene3D Ribonuclease Inhibitor 38 149 IPR032675 -
Psa5g4484 984 SMART serkin_6 706 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4484 984 SUPERFAMILY Protein kinase-like (PK-like) 701 980 IPR011009 -
Psa5g4484 984 Pfam Protein tyrosine and serine/threonine kinase 708 980 IPR001245 GO:0004672|GO:0006468
Psa5g4484 984 SUPERFAMILY L domain-like 370 633 - -
Psa5g4484 984 PANTHER UNNAMED PRODUCT 16 984 - -
Psa5g4484 984 Gene3D Ribonuclease Inhibitor 150 235 IPR032675 -
Psa5g4484 984 ProSiteProfiles Protein kinase domain profile. 706 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4484 984 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 16 984 - -
Psa5g4484 984 SMART LRR_typ_2 298 321 IPR003591 -
Psa5g4484 984 SMART LRR_typ_2 564 588 IPR003591 -
Psa5g4484 984 SMART LRR_typ_2 442 464 IPR003591 -
Psa5g4484 984 SMART LRR_typ_2 346 370 IPR003591 -
Psa5g4484 984 SMART LRR_typ_2 274 297 IPR003591 -
Psa5g4484 984 SMART LRR_typ_2 129 152 IPR003591 -
Psa5g4484 984 SMART LRR_typ_2 153 177 IPR003591 -
Psa5g4484 984 SMART LRR_typ_2 492 516 IPR003591 -
Psa5g4484 984 Gene3D Ribonuclease Inhibitor 392 634 IPR032675 -
Psa5g4484 984 Pfam Leucine rich repeat N-terminal domain 37 79 IPR013210 -
Psa5g4484 984 Pfam Leucine rich repeat 276 334 IPR001611 GO:0005515
Psa5g4484 984 SUPERFAMILY RNI-like 86 431 - -
Psa5g4484 984 Gene3D Phosphorylase Kinase; domain 1 678 785 - -
Psa5g4484 984 Gene3D Ribonuclease Inhibitor 236 391 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4484 Psa-Chr5 390754650 390758940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4484 58 982 Receptor kinase-like Gene Family AT5G65700 57.804 0.0 1068
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa5g4484 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4484 - - gmx:100815103 1472.22