Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4482 GATAAAGATTGGGAAGGCGAGGACTCAGATGAAGCTGATGATAGTGATGAGGACATAGATGTTTGGGATAACGATGGTTCTTATTTAGATAAGAAGGCTAAGGGAAGGCAGCGAGGTAAATTTCGACAAAGTGTAAGACCAACCAGAGATCGTAAAGCATGTACTGCATCCAGTCGACAAAGAAGAGTTCAAGCATCTTTTGAAGATGAAGATGATGACTCTACAGCAGAGGATTCTGATAGTGAGAGTGATGAAGATTTCACAAGCTTGAAGAAGAGACGTGTGCATGTACTCAAGAATAATGTCCGATCATCTGCACCCACAAGTTCTTACAGGCACAGCAATGAGGTTCGCTCTTCTACTAGAACAGTTAGGAAAGTATCATATGTTGAAAGTGATGAAAGTGAAGCAGCTGATGAAGGGAAGAAGTCTCAAAAGGAAGAAATTGAAGAGGACGACGGGGACTCCATTGAAAAGGTGCTTTGGCATCAGCCAAAAGGCACGGCTGCAGAGGCTCTAGAGAATAATCAATCAATGGAGCCTGTTTTAATGAGTCGCTTATTTGATTCTGAACCTGATTGGAACAATGAGGAATTTTTGATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAGTGGAAGTCATTTATTGAGCTGCAAAATCTCACTGGTTTTAAAAAAGTTTTGAATTATACCAAGAGAGTGACAGAGGAAATCAGGTACAGGATGAGAATATCGAGAGAGGAGATTGAGATCAACGATGTGAGTAAGGAGATGGACATAGATATTATCAAACAAAACAGTCAGGTGGAAAGAATAATTTCAGATAGGATTTGCAAAGACAATTCTGGCAATGTTATTCCAGAATATTTGGTCAAGTGGCAAGGACTCTCTTATGCTGAAGTGACCTGGGAGAAGGACATTGATATTGCTTTTGCTCAACATGCTATTGATGAATATAAGGCTCGCGAGGCTGCAATGTCAGTCCAAGGAAAGACGGTAGATCTTCAGCGTAGGAAGGGCAAAGCAAGTTTACGGAAACTTGATGAACAGCCGGAATGGTTGAAGAGTGGAAAGCTTCGTGACTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGATAAATGATACAAATGTTGTTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCTATGCTTGGTTTTCTACAGAATACCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCATTGTCTACGTTATCGAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTAATATGAGTGTTATTGTTTATGTTGGTACTCGTTCAAGTAGAGAGGTTTGCCAACAATATGAATTTTATAATGAGAACAAAGCTGGCAAGCCAATTAAATTCAATACACTGTTGACTACGTATGAAGTAGTTCTGAAGGATAAAGCCGTTCTCTCAAAGATCAAATGGAACTATCTGATGGTAGATGAGGCTCATAGACTTAAAAATAGTGAGGCGCAGTTGTATACCGCTCTTTCAGAATTCAACACAAAGAACAAGTTGCTGATCACTGGGACTCCATTGCAAAATAGTGTTGAAGAGCTATGGGCCTTGCTCCACTTCCTTGATTCAGATAAGTTCAAGAGCAAAGATGAATTTGTTCAAAACTATAAGAATCTAAGTTCTTTCAATGAAAATGAGCTTGCTAATCTTCATATGGAATTGAGGCCTCACATGCTTCGAAGAATTATCAAAGACGTAGAGAAATCATTACCCCCCAAAATTGAGCGTATTCTTAGGGTTGATATGTCTCCTCTGCAGAAGCAGTATTATAAGTGGATTTTGGAACGCAACTTTCATGATTTAAACAAGGGAGTTCGAGGGAATCAGGTTTCTCTTCTAAATATTGTGGTAGAATTGAAGAAGTGCTGTAATCACCCCTTCCTGTTTGAAAGTGCCGACCATGATTATGGTGGGAACTCTGAAAGTAGTGACAGCAGTAAACTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTCATACTTGATAAGCTACTTGTCAGATTGCATGAGACAAAGCATCGTGTACTGATTTTCTCTCAGATGGTTAGAATGTTAGATATACTGGCACAGTATCTGTCACTTCGAGGGTTTCAATTTCAGAGGCTTGATGGGAGTACAAAATCTGAGCTGCGACAACAGGCAATGGAACATTTTAATGCACCAGGCAGTGATGATTTTTGCTTCCTTCTTTCAACGCGAGCAGGCAATGAGTCGAGCTCAATCGATTGGGCAACAGAAAGTGTTAACATATATAGATTTGTTACAGCCAAAGTGTTGAGGAAGATTTGTTGA 2352 0.4001 DKDWEGEDSDEADDSDEDIDVWDNDGSYLDKKAKGRQRGKFRQSVRPTRDRKACTASSRQRRVQASFEDEDDDSTAEDSDSESDEDFTSLKKRRVHVLKNNVRSSAPTSSYRHSNEVRSSTRTVRKVSYVESDESEAADEGKKSQKEEIEEDDGDSIEKVLWHQPKGTAAEALENNQSMEPVLMSRLFDSEPDWNNEEFLIKWKGQSHLHCQWKSFIELQNLTGFKKVLNYTKRVTEEIRYRMRISREEIEINDVSKEMDIDIIKQNSQVERIISDRICKDNSGNVIPEYLVKWQGLSYAEVTWEKDIDIAFAQHAIDEYKAREAAMSVQGKTVDLQRRKGKASLRKLDEQPEWLKSGKLRDYQLEGLNFLVNSWINDTNVVLADEMGLGKTVQSVSMLGFLQNTQQIHGPFLVVVPLSTLSNWAKEFRKWLPNMSVIVYVGTRSSREVCQQYEFYNENKAGKPIKFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTALSEFNTKNKLLITGTPLQNSVEELWALLHFLDSDKFKSKDEFVQNYKNLSSFNENELANLHMELRPHMLRRIIKDVEKSLPPKIERILRVDMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHDYGGNSESSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSELRQQAMEHFNAPGSDDFCFLLSTRAGNESSSIDWATESVNIYRFVTAKVLRKIC* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4482 783 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 2 755 - -
Psa5g4482 783 Gene3D - 351 590 IPR038718 -
Psa5g4482 783 ProSiteProfiles Chromo and chromo shadow domain profile. 177 234 IPR000953 -
Psa5g4482 783 MobiDBLite consensus disorder prediction 1 156 - -
Psa5g4482 783 MobiDBLite consensus disorder prediction 1 23 - -
Psa5g4482 783 CDD SF2_C_SNF 666 757 - -
Psa5g4482 783 CDD CD1_tandem 153 233 - -
Psa5g4482 783 SUPERFAMILY Chromo domain-like 152 235 IPR016197 -
Psa5g4482 783 SUPERFAMILY Chromo domain-like 247 323 IPR016197 -
Psa5g4482 783 Pfam SNF2-related domain 380 648 IPR000330 GO:0005524|GO:0140658
Psa5g4482 783 Gene3D - 591 756 IPR027417 -
Psa5g4482 783 MobiDBLite consensus disorder prediction 127 156 - -
Psa5g4482 783 SMART chromo_7 266 325 IPR000953 -
Psa5g4482 783 SMART chromo_7 153 236 IPR000953 -
Psa5g4482 783 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 372 544 IPR014001 -
Psa5g4482 783 Gene3D - 270 322 - -
Psa5g4482 783 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 680 783 IPR001650 -
Psa5g4482 783 SMART ultradead3 356 552 IPR014001 -
Psa5g4482 783 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 2 755 - -
Psa5g4482 783 Gene3D - 142 268 - -
Psa5g4482 783 MobiDBLite consensus disorder prediction 43 69 - -
Psa5g4482 783 Pfam Helicase conserved C-terminal domain 677 761 IPR001650 -
Psa5g4482 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 581 IPR027417 -
Psa5g4482 783 MobiDBLite consensus disorder prediction 101 126 - -
Psa5g4482 783 ProSiteProfiles Chromo and chromo shadow domain profile. 268 332 IPR000953 -
Psa5g4482 783 Pfam Chromo (CHRromatin Organisation MOdifier) domain 269 323 IPR023780 -
Psa5g4482 783 MobiDBLite consensus disorder prediction 70 84 - -
Psa5g4482 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 758 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4482 Psa-Chr5 390616874 390634207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4482 382 677 RAD5 or RAD16-like Gene Family AT5G22750 26.849 2.08e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa5g4482 SNF2_N 1.4e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4482 K11367 - gmx:100792398 1245.34