Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4471 ATGCTATGGAATACAGTTGAAGAAATAGTTTATTCAACCTTTTGTCTCTGTGTTTTGGTTACGGGTATGTTTACATTTCAAGTTCCGTCTTTTTTGAGAAGAAAAGCCAACCCTAAAAATGTTGTTTCCATCATACTGGGAGGAGGTTCTGGTGTTCAACTTTTTCCTCTTACCAAACGAGCTGCTACACCAGCTGTTCCTGTTGGTGGATGCTACAGGCTTATAGACATTCCAATGAGCAACTGCATCAACAGCGGGATCAACAAAGTATTTGTATTGACACAGTTCAACTCAGCATCCCTTAACCGTCATATCTCTCGCACCTATTTTGGAAATGGCATCAACTTTGGAGATGGATACGTAGAGGTACTTGATGTTGAGTTTCACAACGTGAAAGCTTTGTATAGACGAGCGCAGGCATATATAGAGACGGGAGACTTTCTTTTAGCAGATGTAGACATCAAGAAAGCTCTTGAGGTGGATCCACAAAACAGGGAGGTAAAGACGCTGAAAACAAAAGTGAAGCAACTTCAAGCTGATAGTGACAAAAAAGATGCCAAACTGTATGAAAATATGTTCGCTCATAAACCGAAGAGATTGAAGGTTGAGAAAGAAGAGGATGAAGTGGTGAAAACGGAAATGGACAATGTTATTGCTGATAATGTTGGTGATAATGTTGGTGATATTGCCGGTATGGGATCCGATCTATTTGGTTCATATGCAGAGGCATCTTGTGCTGCCCTTGTT 747 0.407 MLWNTVEEIVYSTFCLCVLVTGMFTFQVPSFLRRKANPKNVVSIILGGGSGVQLFPLTKRAATPAVPVGGCYRLIDIPMSNCINSGINKVFVLTQFNSASLNRHISRTYFGNGINFGDGYVEVLDVEFHNVKALYRRAQAYIETGDFLLADVDIKKALEVDPQNREVKTLKTKVKQLQADSDKKDAKLYENMFAHKPKRLKVEKEEDEVVKTEMDNVIADNVGDNVGDIAGMGSDLFGSYAEASCAALV 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4471 249 SUPERFAMILY Nucleotide-diphospho-sugar transferases 39 159 IPR029044 -
Psa5g4471 249 Pfam Nucleotidyl transferase 43 111 IPR005835 GO:0009058|GO:0016779
Psa5g4471 249 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 38 118 IPR029044 -
Psa5g4471 249 Gene3D Tetratricopeptide repeat domain 119 191 IPR011990 GO:0005515
Psa5g4471 249 Pfam Inorganic H+ pyrophosphatase 216 249 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa5g4471 249 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 24 125 - -
Psa5g4471 249 Coils Coil 167 187 - -
Psa5g4471 249 ProSiteProfiles TPR repeat profile. 131 164 IPR019734 GO:0005515
Psa5g4471 249 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 24 125 IPR011831 GO:0005978|GO:0008878
Psa5g4471 249 SMART tpr_5 131 164 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4471 Psa-Chr5 389056241 389058751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4471 121 195 Calmodulin-binding Proteins AT3G25230 56.000 1.01e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4471 K00975 - gmx:100808791 188.734