Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4455 ATGTTTATGTGGGATGCTTGCAAGAATCTGACCTTGGTTATTTTAGTGGTAGTTGCAGCAACTTCATTGGCACCGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCATTTGTAGTTATTCTTGTTATTGTTGTTACAACTGTCCCTGCTGATGGAGTTGTGATTAGTGGTTACTCTCTTTCTATTGATGAATCGAGCATGACAGGGGAAAGCAAAATTACTCACAAGGATTCTAAGGATCCCTTTCTGATGTCTGACTGTAAGGTTGCAGATGGTAGTGGTACTATGTTGGTAACGGGTGTTGGAATTAATACTGAATGGGGCCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTTTGGAGGTCCGCTTGAATGGTGTAGCCACCTTCATTGAATCGCCGCTAATAAACTCTCGCCAAAACCCCTTAACCCAAGCTACCACGCCTACATCTTCGTCATCTCCAGCTCACCCTTCATCACCCCCTTCACACAACCTCCGCGAACCACCTCCATCCTCGACGCCGTCCACACAACCGCCTTCAACACCCTCGACCTTCACAACCCCTACCGCTGTCAAACCCCTCCAACCATCAATCACTACGCCATCTCAGAAAACCTTGCCATCGCTCAACCGTCTAACCCTTAATCGACCTTCAGCCGCCACTAAAAAACCCACGAATCCGTCAAGCTCCTTCGGATCCGCGGATTCGCCTTCGCCTTCACGCGATTTCGAATCTTCAGGGTACCCTGTGTTGGTTGTTGTCTGTTTTGTGCAGGTCCGCTGTCTCGAGCTCTTCGACGTCAACAACTCAGCACACCGCGTTAGAGTTCTATCTCTCGGCAAAGTGGGTTTCAACAAGTTTCTTCCAACAAACTCAGAGCAGCAAACAGAACACGACGATTTGGTCATTTTGAGGCCCACTGTTGAAACAACCGATCATAAAGCTCATGGACTTGTTCTTGAGCTTGGATCTGTTGGTATTGTTGGGGTTACCAAAGTGATGGCGAAAACCGTTTTTGCTGATATTAGGAGCATTCCTGCTACTTCAAGGGAGGAGGCTGGTGATCATAGTTTGGAACATTTTGAGGTTTGTCCTCTGAAACCACAACCTTCCGGCATTGTTAAGGCTAAGAGTGAGGATGATCATGAGAAATCAGGTGGTTATTCCATTTCTAAAGCAGCAAATAATACAAGAGCTATTAATGGAAACAACTTGTGTGGTCCGAACAATTACCGTTAG 1275 0.4627 MFMWDACKNLTLVILVVVAATSLAPGIKSEGIKEGWYDGGSIAFVVILVIVVTTVPADGVVISGYSLSIDESSMTGESKITHKDSKDPFLMSDCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLEVRLNGVATFIESPLINSRQNPLTQATTPTSSSSPAHPSSPPSHNLREPPPSSTPSTQPPSTPSTFTTPTAVKPLQPSITTPSQKTLPSLNRLTLNRPSAATKKPTNPSSSFGSADSPSPSRDFESSGYPVLVVVCFVQVRCLELFDVNNSAHRVRVLSLGKVGFNKFLPTNSEQQTEHDDLVILRPTVETTDHKAHGLVLELGSVGIVGVTKVMAKTVFADIRSIPATSREEAGDHSLEHFEVCPLKPQPSGIVKAKSEDDHEKSGGYSISKAANNTRAINGNNLCGPNNYR* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4455 424 Pfam E1-E2 ATPase 52 141 - -
Psa5g4455 424 MobiDBLite consensus disorder prediction 190 252 - -
Psa5g4455 424 MobiDBLite consensus disorder prediction 146 172 - -
Psa5g4455 424 MobiDBLite consensus disorder prediction 146 252 - -
Psa5g4455 424 PANTHER CALCIUM-TRANSPORTING ATPASE 9, PLASMA MEMBRANE-TYPE 1 55 - -
Psa5g4455 424 PANTHER CALCIUM-TRANSPORTING ATPASE 9, PLASMA MEMBRANE-TYPE 55 142 - -
Psa5g4455 424 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 142 IPR023298 -
Psa5g4455 424 PANTHER CATION TRANSPORTING ATPASE 1 55 - -
Psa5g4455 424 PANTHER CATION TRANSPORTING ATPASE 55 142 - -
Psa5g4455 424 SUPERFAMILY Calcium ATPase, transduction domain A 47 119 IPR008250 -
Psa5g4455 424 Gene3D - 2 147 - -
Psa5g4455 424 MobiDBLite consensus disorder prediction 173 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4455 Psa-Chr5 387047622 387052632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4455 2 144 Primary Pumps ATPases AT5G57110 60.000 3.90e-64 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4455 K01537 - gmx:100792945 224.172