Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4454 ATGGAAAATGTTTCAGATGAGATGAATTTGCCACCTGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTATAAGTCATTATCTTTATAGAAAGGTAACTGACATTAACTTTTCTTCTAGGGCCATTGGAGAGGTTGATTTGAACAAATCTGAGCCTTGGGATTTGCCATGGAAAGCAAAAATGGGCGAAAAAGAGTGGTATTTTTTCTGTGTGAGAGATAGAAAGTATCCAACAGGTTTGAGGACTAATAGAGCAACTGAAGGTGGATATTGGAAGGCAACTGGAAAAGATAAGGAGATTGACAGAGGTAAATCTCTTGTTGGAATGAAGAAAACTCTTGTTTTTTACAAAGGAAGAGCACCTAAAGGAGAGAAAACAAATTGGGTTATGCATGAATATAGACTTGAGGGTAAATTCTCTGTGATCAACCTACCTAAAACTGCAAAGAATGAGTGGGTGATTTGCAGGATATTTCAGAAGAGTTTATCAGACAAAAAGACATGCACACTTTCTGGGATAATGAGGTTAGAATCATTTGGAAATGAAATGAGTTCTTCTATTCTTCCACCTTATTCCATTAACAAAACCAAATCACCTTACGTGTCCTGCTTCTCCAATCCAATTGAAACAAACCAAGCTGGAACCTTTGATTCCTTTACCAACAACCCTTTTGAGGTTCCTTCAAATCATACAATGAATCTTCCAAAAAACACACTTTCCATTGATTCATTTTACTCTACTCAAGAACTGCAAGCTACACCAAATTTTCCATCACCAATTGATCTATCTACCTTGTGGAACTACTAA 807 0.368 MENVSDEMNLPPGFRFHPTDEELISHYLYRKVTDINFSSRAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEGGYWKATGKDKEIDRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSVINLPKTAKNEWVICRIFQKSLSDKKTCTLSGIMRLESFGNEMSSSILPPYSINKTKSPYVSCFSNPIETNQAGTFDSFTNNPFEVPSNHTMNLPKNTLSIDSFYSTQELQATPNFPSPIDLSTLWNY* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4454 268 Pfam No apical meristem (NAM) protein 11 135 IPR003441 GO:0003677|GO:0006355
Psa5g4454 268 Gene3D NAC domain 19 163 IPR036093 GO:0003677|GO:0006355
Psa5g4454 268 SUPERFAMILY NAC domain 6 160 IPR036093 GO:0003677|GO:0006355
Psa5g4454 268 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 5 258 - -
Psa5g4454 268 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
Psa5g4454 268 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4454 Psa-Chr5 386868661 386870997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4454 8 223 NAC Transcription Factor Family AT5G07680 68.610 9.17e-108 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g4454 NAM 1.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4454 - - gmx:100798002 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4454 5 386868661 386870997 Psa5g4454 5 386868661 386870997 ECH