Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4431 ATGTCACGGTCCGATACTATTATGATGACGACTACTGCAACTACTTCGGATCTGAATAGAACTGGTACCGTTGAAAGAGACATTGAGCAGGCAATAACTGCTTTAAAGAAAGGGGCTTGTTTGCTTAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCCTTTTCGGCTTTCCAATGACGAATCTCTTTTGATATGGTTTTCAGGGAAAGAAGAGAAGCGCCTTAAACTAACTAATGTTTCTAGAATTATATCTGGACAACGCACGCCTATCTTTCAAAGATATCCACGGCCTGCGAAGGAATACCAGTCATTTTCACTTATCTACAATGACAGATCACTGGACCTGATTTGCAAGGACAAAGATGAAGCTGAGGTATGGTTCAGTGGATTGAAAGCATTGATTTCACGGAGCCATCACCGGAAGTGGAGAATAGAGTCAAGAAGTGATGGTTTTCCATCTGAAATTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTGCACTCTCCATTTAGTAGTAATGAAAGCTTCCAAAAGGATAGTGGGGATCACCTTCACCTTCATAGCCCATATGAGAGCCCTCCTGAGAATGGTTTGGATAAAGCATTTGCTGATGCTACGTATTATCCTATTCCTCCAAAGGGTTTCTTCCCACCAGATTCCGTCAGTGGTTCAGTCCACTCCGTGTCATCAGGAGGATCAGATAGTGTGCATGGTCACATGAAGACAATGCCTATGGATGCCTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCTTCTAGCCAAGGTTCTGCTCGTGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACTGGTGATGGCGTTCTTGGTGGCGGGGTTCGCCGAGTTGGGAGTTGTGTAGATGTCAAAATGGATTCTCTATTGCCGAAAGCCTTGGAATCAGCAGTAGTTCTAGATGTACAGAATATTGCTTGTGGTGGGCAACATGTGGCCTTAGTGACGAAACAAGGTGAAATTTTCTCTTGGGGAGAAGAATCTGGAGGCAGGCTCGGGCATGGAGTCGATTCTGATGTTCCCCATCCAAAGCTCATTGAATCTTTGAGTAATACAAATATCGAACTAGTTGCTTGTGGAGAGTATCATACTTGTGCTGTGACACTTTCTGGAGATCTTTATACATGGGGTGACGCCACTTACAATTATGGTCTTCTGGGGCATGGAAATCAGGTGAGTCATTGGGTTCCAAAAAGAGTAAATGGTCCCTTGGAGGGTATACACGTTTCATCTATTTCTTGTGGTCCTTGGCATACTGCTGTTGTAACCTCTTCTGGGAAGTTATTTACTTTTGGTGATGGTACATTTGGTGTTCTCGGTCATGGGGACCGGAAAAGTGTTTGCTTGCCAAGGGAAATAGAGTCCTTGAAGGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTAATGGTTGGAAATCCTAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGAGATGGAGACAAAGGTAGACTTGGGCATGGTGACAAGGAATCCAAACTTGTTCCAACCTGTGTTGTAGCCCTTATTGAACCTAACTTTTGTCAAGTTGCTTGTGGGCATAGTATGACTGTTGCACTTTCTAGAGCAGGCCATGTCTATACCATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATCCTCAATCTGATGGTAAACTACCAACTCGCATTGAAGGGAAGCTTTCAAAGAGTTTTGTGGAGGAGGTAGCCTGTGGTGCTTATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTTCACTTGGGGGAAAGGTTCAAATGGTCGTTTAGGCCATGGGGATACTGACGATAGAAACTCCCCAACATTAGTGGAAGCTTTAAAAGACAAACAAGTTAAAAGTATTGCTTGTGGTACAAATTTCACTGCTTCCATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAATCCATGTGTTCTGGCTGCCGTGTGCCATTTAATTTCAAAAGGAAGCGCCACAATTGTTATAATTGTGGACTCATTTTTTGTCATTCATGCAGCAGTAAGAAGTCTGTTAAGGCTTCAATGTCACCAAATCCCAACAAACCTTATCGTGTCTGCGATAACTGTTTTAACAAAATAAAGAAAACTACAGAAACGGACGGTTCATCTCAGTCTTCTATTAGCAGGAGAGGAAGTATTAATCAAGGGTCACTTGAGTCTATTGGTAAGGATGATAAATTGGATTCTAGATCTCAAAATCAATTTTCTAGGTTCTCTTCAATGGAATCCTTAAAACAAGTAGACAGACGATCTTCAAAGAAAAATAAGAAAATGGAATTCAACAGTAGTCGGGTCTCGCCAGTTCCAAATGGAGGTTCTCAATGGGGGGCAATGCATATTTCTAAATCTTCTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCTCGGGCAACATCCCCAATATCTAGGCGTCCTAGTCCCCCACGGTCAACTACTCCAACCCCAACGCTGGGAGGACTGACAACGCCAAAGATAGTTGTGGATGATACGAAGAGGACTAACGATAACCTCGGCGCGGAGGTTGTTAAATTAAGATCTCAGGTGGAAAACTTGACTCGGAAATCCCAACTTCAAGAAGATGAGTTGGAAAAAACAATCAAACAGTTAAAAGAAGCAATAGCAATTGCTGGCGAAGAAACGGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTTCTCAGCTGAAGGACATGGCTGAAAGGCTGCCCATAGGAGCAGTTAGGAATGTCAGATCACCCTGTAACTCCACCCCTGGTTCCAATGACTTGAGCGTTGCTTCCATCGATAGATTAAATATTCAAGCAACAAGCCCCGAATCAGACGTAACTGGATCATATAGCCAGTTATTTTCAAATGGATCAAGCACCGCCACCGACCGTTCTGCTGGTCACTGTAAACATAGTCAATCAGATGCAGCTAGCAGAAATGGGAGCAAACCAAAAGAGAACGAGTCCCGTAATGAGAGCGAATGGGTTGAGCAAGACGAGCCTGGTGTATATATTACTCTCACTTCCCTAGCAAGCGGTGCAATAGATCTTAAGAGGGTTCGGTTCAGTCGCAAACGGTTTAGTGAAAAACAAGCAGAACATTGGTGGGCTGAAAATCGAGTAAGAGTATATGAACAGTACAATGTGCGCACGATTGACAAGTCAACCATTGGTATTGGGAGTATGGATCTGGCTCATTGA 3336 0.4359 MSRSDTIMMTTTATTSDLNRTGTVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESLLIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPAKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRIESRSDGFPSEINSPRTYTRRSSPLHSPFSSNESFQKDSGDHLHLHSPYESPPENGLDKAFADATYYPIPPKGFFPPDSVSGSVHSVSSGGSDSVHGHMKTMPMDAFRVSLSSAVSSSSQGSARDDGDALGDVFIWGEGTGDGVLGGGVRRVGSCVDVKMDSLLPKALESAVVLDVQNIACGGQHVALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDATYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGKLFTFGDGTFGVLGHGDRKSVCLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNPSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVALIEPNFCQVACGHSMTVALSRAGHVYTMGSCVYGQLGNPQSDGKLPTRIEGKLSKSFVEEVACGAYHVAVLTSRTEVFTWGKGSNGRLGHGDTDDRNSPTLVEALKDKQVKSIACGTNFTASICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLIFCHSCSSKKSVKASMSPNPNKPYRVCDNCFNKIKKTTETDGSSQSSISRRGSINQGSLESIGKDDKLDSRSQNQFSRFSSMESLKQVDRRSSKKNKKMEFNSSRVSPVPNGGSQWGAMHISKSSNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTTPKIVVDDTKRTNDNLGAEVVKLRSQVENLTRKSQLQEDELEKTIKQLKEAIAIAGEETAKCKAAKEVIKSLTSQLKDMAERLPIGAVRNVRSPCNSTPGSNDLSVASIDRLNIQATSPESDVTGSYSQLFSNGSSTATDRSAGHCKHSQSDAASRNGSKPKENESRNESEWVEQDEPGVYITLTSLASGAIDLKRVRFSRKRFSEKQAEHWWAENRVRVYEQYNVRTIDKSTIGIGSMDLAH* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4431 1111 SUPERFAMILY FYVE/PHD zinc finger 664 735 IPR011011 -
Psa5g4431 1111 MobiDBLite consensus disorder prediction 842 864 - -
Psa5g4431 1111 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 482 492 IPR000408 -
Psa5g4431 1111 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 668 730 IPR017455 -
Psa5g4431 1111 SMART fyve_4 662 731 IPR000306 GO:0046872
Psa5g4431 1111 Coils Coil 874 926 - -
Psa5g4431 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 508 559 IPR000408 -
Psa5g4431 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 444 495 IPR000408 -
Psa5g4431 1111 Gene3D - 225 399 IPR009091 -
Psa5g4431 1111 Gene3D - 400 499 IPR009091 -
Psa5g4431 1111 MobiDBLite consensus disorder prediction 1026 1042 - -
Psa5g4431 1111 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 28 1097 - -
Psa5g4431 1111 MobiDBLite consensus disorder prediction 1002 1025 - -
Psa5g4431 1111 Gene3D - 501 674 IPR009091 -
Psa5g4431 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 388 IPR000408 -
Psa5g4431 1111 Pfam Transcription factor regulating root and shoot growth via Pin3 1037 1092 IPR013591 -
Psa5g4431 1111 SUPERFAMILY PH domain-like 27 135 - -
Psa5g4431 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 560 611 IPR000408 -
Psa5g4431 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 613 659 IPR000408 -
Psa5g4431 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 560 608 IPR000408 -
Psa5g4431 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 388 440 IPR000408 -
Psa5g4431 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 507 556 IPR000408 -
Psa5g4431 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 443 492 IPR000408 -
Psa5g4431 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 337 385 IPR000408 -
Psa5g4431 1111 CDD PH_PLC_plant-like 26 136 - -
Psa5g4431 1111 Coils Coil 930 950 - -
Psa5g4431 1111 Pfam Transcription factor BRX N-terminal domain 925 956 IPR027988 -
Psa5g4431 1111 Pfam Unstructured region between BRX_N and BRX domain 965 1031 - -
Psa5g4431 1111 MobiDBLite consensus disorder prediction 154 186 - -
Psa5g4431 1111 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 430 440 IPR000408 -
Psa5g4431 1111 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 28 1097 - -
Psa5g4431 1111 MobiDBLite consensus disorder prediction 736 755 - -
Psa5g4431 1111 MobiDBLite consensus disorder prediction 736 809 - -
Psa5g4431 1111 Gene3D - 26 143 IPR011993 -
Psa5g4431 1111 MobiDBLite consensus disorder prediction 1002 1042 - -
Psa5g4431 1111 CDD FYVE_like_SF 673 726 - -
Psa5g4431 1111 PRINTS Chromosome condensation regulator RCC1 signature 320 333 IPR000408 -
Psa5g4431 1111 PRINTS Chromosome condensation regulator RCC1 signature 339 355 IPR000408 -
Psa5g4431 1111 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Psa5g4431 1111 PRINTS Chromosome condensation regulator RCC1 signature 430 446 IPR000408 -
Psa5g4431 1111 PRINTS Chromosome condensation regulator RCC1 signature 446 460 IPR000408 -
Psa5g4431 1111 PRINTS Chromosome condensation regulator RCC1 signature 549 567 IPR000408 -
Psa5g4431 1111 PRINTS Chromosome condensation regulator RCC1 signature 607 628 IPR000408 -
Psa5g4431 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 275 336 IPR000408 -
Psa5g4431 1111 Pfam Pleckstrin homology domain 29 135 IPR001849 -
Psa5g4431 1111 MobiDBLite consensus disorder prediction 154 180 - -
Psa5g4431 1111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 737 IPR013083 -
Psa5g4431 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 612 663 IPR000408 -
Psa5g4431 1111 SUPERFAMILY RCC1/BLIP-II 274 665 IPR009091 -
Psa5g4431 1111 MobiDBLite consensus disorder prediction 779 796 - -
Psa5g4431 1111 Pfam FYVE zinc finger 664 730 IPR000306 GO:0046872
Psa5g4431 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 389 443 IPR000408 -
Psa5g4431 1111 ProSiteProfiles BRX domain profile. 1038 1093 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4431 Psa-Chr5 383784580 383810708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4431 934 1102 Major Intrinsic Protein MIP AT1G31880 30.769 5.08e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4431 - - gmx:100791947 1873.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4431 5 383784580 383810708 Psa5g4431 5 383784580 383810708 ECH