Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4415 ATGGTTGTAATGAAGTCTGCAAATGATTTTGACAACATGCAGAATGGCATTTCCGATTCAGAGAGGCATGTTGCTGTAGAAGAATTTGAGTCGCAGAGTGTTGATGTTGACTGTGGGAATGATGACATTGAGTTTGTTTGGGAAAGAGAAATAACATCACCAGTTAAGGCCACACGAAACGTGCTTAATATTCCAAGAAAGGCTGCAGAGGGGTGTGTTACAAGGTCTACAGGTACGAAAGTGAATATCATTGATGTTGATAATGGAAATTGGTATGGAAGTGAATTACACAGTGCAAAACGAAAAAAAGATGAAAAGTTTGTAGGCAAAGGGTGGTATGAATTTGAGAAAGAAAAACAACTCAGGAAAGGTGACGTGTTAGGCTTTACATTTGATCCATCAGAAGGTTTCTTGTATGTGGAGAAGAAAAACAATTGA 438 0.3836 MVVMKSANDFDNMQNGISDSERHVAVEEFESQSVDVDCGNDDIEFVWEREITSPVKATRNVLNIPRKAAEGCVTRSTGTKVNIIDVDNGNWYGSELHSAKRKKDEKFVGKGWYEFEKEKQLRKGDVLGFTFDPSEGFLYVEKKNN* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4415 145 Gene3D - 38 145 IPR015300 -
Psa5g4415 145 ProSiteProfiles B3 DNA-binding domain profile. 47 145 IPR003340 GO:0003677
Psa5g4415 145 SMART B3_2 51 144 IPR003340 GO:0003677
Psa5g4415 145 CDD B3_DNA 62 141 IPR003340 GO:0003677
Psa5g4415 145 Pfam B3 DNA binding domain 57 138 IPR003340 GO:0003677
Psa5g4415 145 SUPERFAMILY DNA-binding pseudobarrel domain 58 138 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4415 Psa-Chr5 382340737 382341262 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa5g4415 B3 5.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4415 - K05273 mtr:MTR_2g062330 66.2402