Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4388 ATGGCTACTTTGCTATGGACACCTTCCAATTCCCACTCTCTCAATCTCAATCTCAACGGAAAACAATCTCCTCTTAAACTAAACGCAAACCCCTCTCTTCATTTCAACCGTCGTTTTCGTCGTTTCAACACCGCAATCTCTTGCAATTCTACTAATCACAACGACGCCGATACAAAACCACAATCTCAATCTCAAGCTATTCAACTTTACTCCCAAATAGAAAGATTAGTTACTACTTCTGCTAGACAATCACAGGATGCATGGGGTTCAGCAGACTGGACTGAAGTCGAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGCACTCTCGCCGACTACAACATCCAGAAGGAATCAACTCTCCATCTGGTCCTCCGTCTTCGCGGTGGCGCAAAGAAGCGTAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCATAAGCACAGGAAGGTGAAGCTTGCGGTTCTCCAGTTCTACAAGGTTGATGATTCTGGAAAGGTGCAGAGGCTGAGGAAGGAGTGCCCTAATGCGGAGTGTGGTGCAGGGACTTTCATGGCGAATCATTTTGATCGTCATTACTATGGGGTGTATTGGTCATTGCAACTCCAATTGCCAGTGGGTTTGATCACTTTTTCATTGCAGATGAAGTGCAGTGTTAAATTTGACCTGTGCCTACCGCACACTTACAAGAAACAGTCAAAGAGCTTCCTATTTGGTGTTGGCCATTCTCTGGGATCGCTTGTCCACCTCCTGATTGGGTCAAGATATGCATGCAAAGATCTGGAAATGTTCTCATGGCATTCAATAACAAG 821 0.4592 MATLLWTPSNSHSLNLNLNGKQSPLKLNANPSLHFNRRFRRFNTAISCNSTNHNDADTKPQSQSQAIQLYSQIERLVTTSARQSQDAWGSADWTEVERLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYYGVYWSLQLQLPVGLITFSLQMKCSVKFDLCLPHTYKKQSKSFLFGVGHSLGSLVHLLIGSRYACKDLEMFSWHSIT 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4388 273 Gene3D - 137 203 IPR038582 -
Psa5g4388 273 Pfam Ribosomal protein S27a 158 196 IPR002906 GO:0003735|GO:0005840|GO:0006412
Psa5g4388 273 SMART Ribosomal_S27_2 158 203 IPR002906 GO:0003735|GO:0005840|GO:0006412
Psa5g4388 273 SUPERFAMILY Zn-binding ribosomal proteins 156 198 IPR011332 GO:0006412
Psa5g4388 273 SMART ubq_7 62 128 IPR000626 GO:0005515
Psa5g4388 273 PRINTS Ubiquitin signature 88 108 IPR019956 -
Psa5g4388 273 PRINTS Ubiquitin signature 109 130 IPR019956 -
Psa5g4388 273 SUPERFAMILY Ubiquitin-like 97 149 IPR029071 -
Psa5g4388 273 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 97 202 - -
Psa5g4388 273 ProSiteProfiles Ubiquitin domain profile. 97 132 IPR000626 GO:0005515
Psa5g4388 273 Pfam Ubiquitin family 98 130 IPR000626 GO:0005515
Psa5g4388 273 Gene3D - 55 136 - -
Psa5g4388 273 PANTHER UBIQUITIN 97 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4388 Psa-Chr5 375449695 375452218 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4388 97 198 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 89.216 5.28e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4388 K02977 - twl:120007508 175.637