Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4387 ATGGACTACTACAACATACTCAAAGTGAGTCGAAGCGCTACCGACATTGATATCAAGAAATCTTACAGAAAGCTTGCTATGATATGGCACCCTGACAAAAACCCTGATAACAGAGCCGAAGCTGAGTCCAAATTCAAGCTCATTTCTGAAGCCTACGACGTTTTAACCGATCCAGAAAAACGTAGGATCTATGATAACCACGGCGAGGCCGTGCTTAAGTCCGGTGTCGTCCCTCCGACACCTCGGAAACATCCTCATTTTCCATATGAATCTTCCTCCGCCTCAAGTTCGTCATCACGCCAGAATCGTCATACCTCCTATCATTATAACCCTCGCAATCCTCATGATATTTATACTGAGATCTTTGGTGATGAGGGTAGGGAAACGGATGGGTCTCGGAGGACATCGACTGGTGTGCCGTTTGGTGGACATCCGATGAAAAAAGCTCCTCCTGTCGAGCGTCCGTTGCTTTGCAGCCTGGAAGATCTGTATAGAGGGGTTGACAAGAAATTGAAGATTACCAGAACTGTAACTGATCATGATGGGAGGAGTCGTCCTGAGGAGGAAATTGTGACTATTAATATAAAACCTGGCTGGAAGAAGGGGACAAAGCTTACCTTCACTGAAAAGGGTGACCAAGAGCCTGGCATCATCCCAGCTGATATCACTTTTGTGATTGAGGAGAAACCACATGCACGTTATATAAGGAATGGCAATGATTTGATAATTAATCAAAAGATGACTCTCGTCGACGCCCTTACAAATAAAATATTGGAAATCCCTACCTTGGATGGGAGGCGACTCATGGTCCAGTTGTCAGGTATAATCACACCTGGCTATGTGCACGTAGTACCTAATGAAGGAATGCCATTATCCAAAGAACCTGGAAGGAAGGGAAATTTAAAAATTAAGATCGTTGACATCAAGTATCCCTCGAGTCTAACTCCTCAGCAAAGATCTGATCTGAGGGGAGTCTTAAGTTGA 984 0.4461 MDYYNILKVSRSATDIDIKKSYRKLAMIWHPDKNPDNRAEAESKFKLISEAYDVLTDPEKRRIYDNHGEAVLKSGVVPPTPRKHPHFPYESSSASSSSSRQNRHTSYHYNPRNPHDIYTEIFGDEGRETDGSRRTSTGVPFGGHPMKKAPPVERPLLCSLEDLYRGVDKKLKITRTVTDHDGRSRPEEEIVTINIKPGWKKGTKLTFTEKGDQEPGIIPADITFVIEEKPHARYIRNGNDLIINQKMTLVDALTNKILEIPTLDGRRLMVQLSGIITPGYVHVVPNEGMPLSKEPGRKGNLKIKIVDIKYPSSLTPQQRSDLRGVLS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4387 327 MobiDBLite consensus disorder prediction 89 108 - -
Psa5g4387 327 Pfam DnaJ domain 2 65 IPR001623 -
Psa5g4387 327 ProSitePatterns Nt-dnaJ domain signature. 45 64 IPR018253 -
Psa5g4387 327 SUPERFAMILY HSP40/DnaJ peptide-binding domain 234 320 IPR008971 GO:0006457|GO:0051082
Psa5g4387 327 Gene3D - 149 230 - -
Psa5g4387 327 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 326 - -
Psa5g4387 327 ProSiteProfiles dnaJ domain profile. 2 68 IPR001623 -
Psa5g4387 327 Gene3D - 231 311 - -
Psa5g4387 327 PRINTS DnaJ domain signature 4 22 IPR001623 -
Psa5g4387 327 PRINTS DnaJ domain signature 22 37 IPR001623 -
Psa5g4387 327 PRINTS DnaJ domain signature 40 60 IPR001623 -
Psa5g4387 327 PRINTS DnaJ domain signature 60 79 IPR001623 -
Psa5g4387 327 Pfam DnaJ C terminal domain 153 305 IPR002939 -
Psa5g4387 327 CDD DnaJ_C 150 314 - -
Psa5g4387 327 SUPERFAMILY HSP40/DnaJ peptide-binding domain 152 231 IPR008971 GO:0006457|GO:0051082
Psa5g4387 327 SMART dnaj_3 1 60 IPR001623 -
Psa5g4387 327 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 326 - -
Psa5g4387 327 MobiDBLite consensus disorder prediction 74 112 - -
Psa5g4387 327 CDD DnaJ 2 57 IPR001623 -
Psa5g4387 327 SUPERFAMILY Chaperone J-domain 1 75 IPR036869 -
Psa5g4387 327 Gene3D DnaJ domain 1 134 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4387 Psa-Chr5 375326719 375331138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4387 3 72 C2H2 Transcription Factor Family AT1G74250 37.838 4.05e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4387 K09510 - qsu:112017642 375.17