Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4356 ATGAACAACACTGTTCCTAATTGGAGTTTTGGGAGTGATACTTTTGTCACCAATCAAAAGAAGCAATCTATGGGGCTGGATCATGAACTTGTGGAGCTTCTATGGGAGAATGGTCAAGTAGTATTGCATAGCCAAACAAATAAGAAACCAATGAATTCAAGACATGTTCATAAGAATCTTCAGTCAACAACATTAAGCAACTTGATTCAAGATGATGAAACTGTTTCATGGATCCAACAATACCCTTTTGAGGATCCGATTGGACAAGAATTGTGTTCGAATCTTTTATCCGAACTTGCACCTTGTCATGTCGACTCTTACAATTCACAACCGACTAATACGAAACCTTCTTTTGTCGAGGAATTCTCAATTCCTAGGTTTCATCATCATGTTCCCGATTCGTCGCAAAAAAACAATGATTTGTGCGGATCGAACAAGGTCGTAAACTTTTCGCACTTCTCAAGACTTCCTAATGTTTCTTTAGCATGTAATAACGGCGATGGAGATTTAAGAGACAAAGTTACGGGCAATCTGTCGCAATGTGATATTAGAGAGAGCTCGGCGATGACAGTTGGTTTAAGTTATTGCGGTAGCAACCAAGTCCAACAAGATCCGGATGTAAGTAAGGTATCAAGCGATGGTGTTTGGACGAATACTATATCGGCCGAGCCTCAGCAAGTGAAAGAGGATGTTCAGAGAACAACAATTCATTGGCATGACAAAGGGAAATCGGAGATGTTGGAACCGGCATTTACTTCATCTTCCGGTGGTTCGGGAAGTAGTCTTGGAAAAACATGTTCGTTATCTACAAGAAGTCATGGACAAAAGAGAAAAGGGATGATAGATGTTGAAGATTCGGTAGAACAAAGTGAGGACACAGAACTTAAATCAGCTTTGTCGAACAAGGTGTCGCAGAGGTCAGGGTCGGGTCGAAGGAATCGGGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGACGAAGAGATAGGATTAATGAGAAGATGAAAGCACTGCAACAACTCATACCTCACAGTAGTAAGACAGACAAAGCCTCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGATCTGGCATGGCTCCAATGATGCACCCTGGATTTCAGCACTACATGACACAAATGAGCATGTCAATGCCTACACGTTCATTTCCCCCGCTTCCAAATCCGTTGCAATTACCGAGAACGCAATTTGATCCGTCCGTATCGACGTCTCAGACACCAAATCCAACATTAACATGTCAAAATCCTCTTTTCGGTGCCTTTAACTACCAAAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCTCGATACATGAACTATCATCTTATGCAAAACGCGTCTCAGCCGATGAATATGTACCGATACGGTCCCCAAACTGTACAAAAGAGTCAAACAATGATTCCAACCAGCAATAACAGTGGATCAATGAGTGGAGCAGCAAACATTAATGATAATGTTAATTAG 1521 0.4129 MNNTVPNWSFGSDTFVTNQKKQSMGLDHELVELLWENGQVVLHSQTNKKPMNSRHVHKNLQSTTLSNLIQDDETVSWIQQYPFEDPIGQELCSNLLSELAPCHVDSYNSQPTNTKPSFVEEFSIPRFHHHVPDSSQKNNDLCGSNKVVNFSHFSRLPNVSLACNNGDGDLRDKVTGNLSQCDIRESSAMTVGLSYCGSNQVQQDPDVSKVSSDGVWTNTISAEPQQVKEDVQRTTIHWHDKGKSEMLEPAFTSSSGGSGSSLGKTCSLSTRSHGQKRKGMIDVEDSVEQSEDTELKSALSNKVSQRSGSGRRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMAPMMHPGFQHYMTQMSMSMPTRSFPPLPNPLQLPRTQFDPSVSTSQTPNPTLTCQNPLFGAFNYQNQMQNPALSEQYARYMNYHLMQNASQPMNMYRYGPQTVQKSQTMIPTSNNSGSMSGAANINDNVN* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4356 506 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 492 IPR031066 -
Psa5g4356 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 380 IPR036638 GO:0046983
Psa5g4356 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
Psa5g4356 506 CDD bHLH_AtPIF_like 314 377 - -
Psa5g4356 506 Gene3D - 310 370 IPR036638 GO:0046983
Psa5g4356 506 MobiDBLite consensus disorder prediction 241 318 - -
Psa5g4356 506 MobiDBLite consensus disorder prediction 248 274 - -
Psa5g4356 506 MobiDBLite consensus disorder prediction 293 311 - -
Psa5g4356 506 SMART finulus 320 369 IPR011598 GO:0046983
Psa5g4356 506 Pfam Helix-loop-helix DNA-binding domain 318 364 IPR011598 GO:0046983
Psa5g4356 506 PANTHER TRANSCRIPTION FACTOR PIF5 1 492 - -
Psa5g4356 506 Coils Coil 320 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4356 Psa-Chr5 368754299 368757686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4356 8 494 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.178 4.57e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g4356 HLH 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4356 K16189 - gmx:100800166 644.425