Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4346 ATGTACCAATTTTTTATTGCAAGATTCCCTCATTATAGGACCCTTCACTCTAATTTTCTTTGCCGCAATGCTTTTTCTCTTTTCTTCGATTCTCGTTCTTTCTCTGTTTCCAACACAAACCACCATCATCAACCTGGAAACTTTACCTTATCAACCCTCGTAAATTCATGCGGTTTGTCCCCAGAAACCGCCCTTAAACTCTCCAAAAGGCTGCAAATCAAAAACCCTAATGGCCCAAATGCTGTAGTTCAACTTCTCACCAACCATGGCTTCTCTGATTCCCAGTTACGTAGCTATATCAAGAAACACCCTTTGGTACTTTTATCAGATGCCGAAAAGACCCTTTTGCCAAAAATCCAATTTTTGCAATCCATTGGGGTTTCAACCACTGATCTCCCCAAAATCCTAATTGGGAACACTTCCTTTCTGTCAAAAAGCTTAGACAAACACCTAATCCCTCGTTATGAGGTCATTAGGAGCCTAGTTTGCAATGATAAAGAGGTAGTTTCAGCTTTGAAGCATGGTTCCTGGAACCTTCACTGTGGTTGGGCTGTAAATGATGCAGTTCTGAACATTGAGGTTTTGAGGAACCTCGGTGTGCCTCAAGGTTGCATTTCTCTATTGGTATCCAATTTTCCCGGTATAGCATTCACCAAGCATTCCATATTTGTTGAGGCTGTTAATTCAGTCAAGGAAATAGGGTTTGATCCATCAAAGTCGAATTTTGTTTTGGCACTCCAGGTGTTTGCGAAAATGAACAAGGATATTTGGGAATCAAGATTTAAGATTTTCAATAAATGGGGTTGGTCGAGAGATATATGTCTTTCGGCTTTCTTAAAGCATCCGCAATATATGATGATCTCGGAAAAGAAGATTATTAAAGCAATGAACTTCTTGGTGAATGATGTGGGTGTTAGCCCCGAAGAAATTGCGAAAAGGCCTGGTATACTGAACCGAAACTTGGAGAAGACGTTTATCCCTAGATGGGCTGTTGTTAAAATTTTGAAGTCAAGGGGTTTGATAAAGAGTGATTTACGCATAAGTAGCGTTATTTCAATAAGTGAGAAAAAGTTTTTGGAGCGATATGTTACCCGATTTCAAAAAGACGTGCCCGTGTTATTGGATGCATATAATGGTCATATGTCAGATTGA 1152 0.3976 MYQFFIARFPHYRTLHSNFLCRNAFSLFFDSRSFSVSNTNHHHQPGNFTLSTLVNSCGLSPETALKLSKRLQIKNPNGPNAVVQLLTNHGFSDSQLRSYIKKHPLVLLSDAEKTLLPKIQFLQSIGVSTTDLPKILIGNTSFLSKSLDKHLIPRYEVIRSLVCNDKEVVSALKHGSWNLHCGWAVNDAVLNIEVLRNLGVPQGCISLLVSNFPGIAFTKHSIFVEAVNSVKEIGFDPSKSNFVLALQVFAKMNKDIWESRFKIFNKWGWSRDICLSAFLKHPQYMMISEKKIIKAMNFLVNDVGVSPEEIAKRPGILNRNLEKTFIPRWAVVKILKSRGLIKSDLRISSVISISEKKFLERYVTRFQKDVPVLLDAYNGHMSD* 384
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4346 383 Gene3D Transcription termination factor 3, mitochondrial 50 187 IPR038538 -
Psa5g4346 383 Gene3D Transcription termination factor 3, mitochondrial 188 369 IPR038538 -
Psa5g4346 383 PANTHER CGI-12 PROTEIN-RELATED 25 380 IPR003690 GO:0003690|GO:0006355
Psa5g4346 383 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 25 380 - -
Psa5g4346 383 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Psa5g4346 383 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Psa5g4346 383 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Psa5g4346 383 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Psa5g4346 383 Pfam mTERF 256 359 IPR003690 GO:0003690|GO:0006355
Psa5g4346 383 Pfam mTERF 84 311 IPR003690 GO:0003690|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa5g4346 Psa-Chr5 364966343 364968796 Tandem
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa5g4346 mTERF 2.7e-30 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4346 K15032 - gmx:106799612 444.121