Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4345 ATGTTTCATTTTCTAATTCCCAGATTCATTCCTCATACGACACTTCAATGTCCCTATGTTTTTTCACGTTTATTCAATTTTCGTTCTTTCTCCGTTTTCAGTAATCATCCGTCTGACAACCTTACATTGTCAAACCTCATTAACTCATGTGACTTGTCCCCTGAAACATCCCTTAAACTCTCCACAAGGTTGAAACTCGTAAACCCTGATGGCCCAAATGCTGTCATTCAACTTTTCAGAAGCTATGGCTTCTCTGATTCCCAGTTATCAAAGCTTGTTAAGAAACGCCCTTTTCTGCTTTTGTCAGATGCTGAAAACACCCTTTTGCCAAAGCTCGAGTTTTTGCGATCTATTGGGGTTTCAAACATTGATTTCCCCAAAATCCTAACCGGGAACACTTCCTTTTTGGTAGCAAACTTGGAGAAAAACCTAATACCTCGCTATGAAATCGTTAGGAGCCTAGTTCGTGACAATAAAGAGGTAGTTTCGGCTTTGAAACACGGGTCATGGATTTTTTACAATCATTCCATGGTGAATGATTCTGTTCCAAACGTTGAGGTTTTGAGGAAACTTGGTGTGCCTCAACGTTTTGTTTCGCTTTTGGTTTCTTATTTTCCTAGTGTTGCATTCAACAAGCATTCTGTGTTTGTCGAGGCTGTTAATTCAGTCATCGAAATGGGGTTCAATCCTTTGAAACTTAATTTTGTTTTGGCACTTCGAGTTATTGTAAGTATGGACAAAGAAAATTGGGAATCAAAATTCAAGATTTATGAGAGGTGGGGCTGGTCGAGAGATATCTGTCTTTTGGCTTTCCAGAAGCGGCCTCAGTGTATGTTGATGTCGGAAAAAAGTATTAATAAAACAATGAAGTTTTTGGTGAAGGACGCAGGTCTTTCACCAGAAGTCATTGCTAAATCCCCCGCGATTCTGTCTCGCAACTTGGAGAAGGTACTTGTCCCTAGATTTGCAGTAGTTAAGATTTTGAAGTCAAGGGGTTTGAAAAAGAGGGGTTTGACCTTTAGCAGCTTTACTTTGATAAGCGAGGAAAAGTTTCTCGAGAAATATGTGACTCCATTTCAGAAAGATTTGCCATTGTTATTGGATGCATATAAAGCTACTAAGTCAGATTGA 1131 0.3935 MFHFLIPRFIPHTTLQCPYVFSRLFNFRSFSVFSNHPSDNLTLSNLINSCDLSPETSLKLSTRLKLVNPDGPNAVIQLFRSYGFSDSQLSKLVKKRPFLLLSDAENTLLPKLEFLRSIGVSNIDFPKILTGNTSFLVANLEKNLIPRYEIVRSLVRDNKEVVSALKHGSWIFYNHSMVNDSVPNVEVLRKLGVPQRFVSLLVSYFPSVAFNKHSVFVEAVNSVIEMGFNPLKLNFVLALRVIVSMDKENWESKFKIYERWGWSRDICLLAFQKRPQCMLMSEKSINKTMKFLVKDAGLSPEVIAKSPAILSRNLEKVLVPRFAVVKILKSRGLKKRGLTFSSFTLISEEKFLEKYVTPFQKDLPLLLDAYKATKSD* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4345 376 Pfam mTERF 76 288 IPR003690 GO:0003690|GO:0006355
Psa5g4345 376 Pfam mTERF 242 351 IPR003690 GO:0003690|GO:0006355
Psa5g4345 376 PANTHER CGI-12 PROTEIN-RELATED 32 372 IPR003690 GO:0003690|GO:0006355
Psa5g4345 376 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Psa5g4345 376 SMART mt_12 233 263 IPR003690 GO:0003690|GO:0006355
Psa5g4345 376 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Psa5g4345 376 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Psa5g4345 376 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Psa5g4345 376 Gene3D Transcription termination factor 3, mitochondrial 139 363 IPR038538 -
Psa5g4345 376 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 32 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4345 Psa-Chr5 364890703 364892967 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa5g4345 mTERF 9.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4345 K15032 - gmx:106799612 380.178