Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4325 ATGGGAAGTTCCTGTACAAAACCAGTTGCTCATGTTTCTTCGTCAAATATTTCTGGAAGTAAGAAATCTCAAAGCAGGACAAATTCTTCTCAACAAAAAGCTTCTTTGCAAACGAGTCATGAAAGTGTTGATCCATCAATCTCCGGTAAACTGAAGTCATTCAGCTTGATCGATCTGAAGGAGGCTACTAAGAATTTCCGGCGAGAGAATTTAATCGGAGAGGGAGGGTTTGGGCGTATCTTCAAGGGATGGATTGATGAAAACACGTATAGTCCAACAAAACCAGGGAGTGGAATTGTGGTGGCCGTTAAGAATCTCAAGCCAGAAAGCTTTCAAGGTCACAAGGAATGGCTGGCAGAAGTTAATTATCTAGGGCAGCTTCACCATGAAAATCTTGTGAAACTCGTTGGTTATTGTTTGCAAGGAAAAAACAGGCTTCTAGTTTATGAGTTTATGCAAAAAGGAAGTTTGGAAAATCATTTATTCAGAAAAAATGTTCAACCTATTGCGTGGGCAACACGTGTCAACATTTCTGTTGGTGTTGCAAAAGGATTAGCATTCTTACATTCCTTGAATGCAAATGTTATATTTCGTGATTTAAAGGCGTCTAATATCCTACTTGATTCGGATTTCAATGCAAAGCTTTCGGATTTCGGGCTGGCAAGAGATGGTCCTACAGGAGATAATACTCATGTTTCAACTAGAGTTATTGGAACTCAAGGTTATGCTGCTCCAGAGTATGTTGCTACAGGTCATTTGACACCAAGGAGTGATGTATACAGCTTTGGCGTTGTTTTGTTAGAGTTACTAACAGGAAAGCGTGCTGTAGAAGACGCAAGACCTGGACTTTCTGAAGAAACTCTGGTGGATTGGGCAATGCCTTTCTTGAGTGATAGCAGAAGAGTTTTGAGAATCATGGACACAAGATTAGGTGGTCAGTACTCAAAGAAAGGAGCACAAGCTGCTGCTGCACTTGCATTACAATGCTTAAACTCAGATCCTAAAATTAGACCACCTATGGTAGATGTTGTTGCAACATTGGAAGGACTTCAATCATCAAATACATTCCAAAGGACACCAAAATATGCAAATGCAACCAAACACTCTTGTCATTCCCTAACCTAA 1125 0.4027 MGSSCTKPVAHVSSSNISGSKKSQSRTNSSQQKASLQTSHESVDPSISGKLKSFSLIDLKEATKNFRRENLIGEGGFGRIFKGWIDENTYSPTKPGSGIVVAVKNLKPESFQGHKEWLAEVNYLGQLHHENLVKLVGYCLQGKNRLLVYEFMQKGSLENHLFRKNVQPIAWATRVNISVGVAKGLAFLHSLNANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGKRAVEDARPGLSEETLVDWAMPFLSDSRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNSDPKIRPPMVDVVATLEGLQSSNTFQRTPKYANATKHSCHSLT* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4325 374 PANTHER OS01G0588500 PROTEIN-RELATED 15 370 - -
Psa5g4325 374 Gene3D Transferase(Phosphotransferase) domain 1 152 370 - -
Psa5g4325 374 ProSiteProfiles Protein kinase domain profile. 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4325 374 SUPERFAMILY Protein kinase-like (PK-like) 41 356 IPR011009 -
Psa5g4325 374 CDD STKc_IRAK 72 350 - -
Psa5g4325 374 ProSitePatterns Protein kinases ATP-binding region signature. 72 104 IPR017441 GO:0005524
Psa5g4325 374 SMART serkin_6 66 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4325 374 PANTHER TYROSINE KINASE FAMILY PROTEIN 15 370 - -
Psa5g4325 374 Gene3D Phosphorylase Kinase; domain 1 40 151 - -
Psa5g4325 374 Pfam Protein tyrosine and serine/threonine kinase 69 347 IPR001245 GO:0004672|GO:0006468
Psa5g4325 374 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4325 Psa-Chr5 361459923 361462269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4325 52 347 Glycoside Hydrolase AT3G07070 51.505 3.67e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa5g4325 PK_Tyr_Ser-Thr 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4325 - - gmx:100800654 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4325 5 361459923 361462269 Psa2g0501 2 22651123 22653818 PCT