Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4320 ATGGGTCATGAATATGGAGGACAAGAAAACTTTCATCATAAGATTTATGTTTTGCTTGAGTTTTCAGCCAAAGATGATGTAATAGCTTTCAAAGGTGCTGTTGAAAAAGAGGATAGTGATGTTGATGAAATAGGGTTATGGTATGGAAGGAAGATTGGTTCAAACAAAATGAGTTATGAAGAGAGGACACCTCTTATGATTGCTTCCATGTTTGGCAGCAAAGGTGTAGTGTCTTATATTCTCGGAACCAGTCGTGTCAATGTTAACCGAGCATGTGGATCAGATAGGGCTACTGCTCTCCACTGTGCTGTATATGGCTGCTCTGCTGATGCTGCTAAGGTTATCCAGCTTTTGCTTGATGCATCTGCAGATGTTAATTCTGTTGATGCCAACGGTAACCGGCCGATTGACTTGATTGTCGACATGTCTCATAGTAGGCTAGGTTCAAGGAATACGACACTACAAGCAATACTAGAAGGTTTCCAAATGGGGAAGCAACAAGGTGGAGATCCACCACAAATCAAGAAGAAATATTATCCCACGGATGTATCCCTACCTGACATAAATAACAAGATCTATAGTACAGATGAATTTAGGATGTTTTCTTTCAAAGTGAAACCTTGTTCAAGGGCTTATACTCATGGATGGATGGAATGTCCCTTTGTTCATCCAGGGGAAACCGCAAGGCGCCGTGATCCGAAGAAATATAACTACACATGTTTCCCTTGTCCCGAGTTTCAGAACGGATCATGCAGCAAAGGGGATACTTGTGAATATGCCCATGGTATTTTTGAATGCTGGCTTCATCCTGCTCAATACAGAACAAAGCTTTGCAAGGACGAGGCTGGATGCACCAGAAGAGTTTGTTTCTTTGCTCATAAACCTGAGGAGCTTCGCCCGACGTATGCTTCTACAGGTTCTGCTTTGCCTTTACCCACAACAGATTCATCTGCTTTTTCATTTTACCCTTTCACAGTGAGCTCTGCGTCTGCTTTACAACCTGCATGGAAGCCACCTTTGACTCCACCTGTAGCATCATGGCATGCTGCTGGAACTGAGTGGCAGACTCAGGCTCCAGTCCCTGCATTTCAGATGCCAAGGAGCAGTTTGAAAACTGTACTGAATGCTAGAGATAATACTGAAATTCAAGAACTTGAAAATTTCTTTAACTGGAAGCTAATGATTGAAGAGATGGCAGGTCTTTCACCCCCTTCAAATAGGCTCGCAGGAGTGAATCCTACCAACTTTGAAGGCATTTTCAGGTCGCAGATACCATCTCTAACAGCAATGCAGGCGCATCAGAATAGGAACCAGCAACTTTGGGGCTATCCTGCTGACCTTATCAATTCAAATGTACTTGGATCACCACAATTTAGGGTTGATCCATCTGTGTATCCAAGATATGATGCCTTTTCAATGCGGAGTCAGAGCATAGCCAGCGTTAATTCCGAGCTTCCTTCTGCTTCCTCAGCTGCTATTGAGCTTCCTACCACCTTCCCTGGTTGGGGCTCCCCAGATGGTAAATTAGACTGGAGCATCAACAACGATGAGCTGAATAAGATGAGAAAATCTTATTCTTCCGGATTTCAAAACTGA 1596 0.4342 MGHEYGGQENFHHKIYVLLEFSAKDDVIAFKGAVEKEDSDVDEIGLWYGRKIGSNKMSYEERTPLMIASMFGSKGVVSYILGTSRVNVNRACGSDRATALHCAVYGCSADAAKVIQLLLDASADVNSVDANGNRPIDLIVDMSHSRLGSRNTTLQAILEGFQMGKQQGGDPPQIKKKYYPTDVSLPDINNKIYSTDEFRMFSFKVKPCSRAYTHGWMECPFVHPGETARRRDPKKYNYTCFPCPEFQNGSCSKGDTCEYAHGIFECWLHPAQYRTKLCKDEAGCTRRVCFFAHKPEELRPTYASTGSALPLPTTDSSAFSFYPFTVSSASALQPAWKPPLTPPVASWHAAGTEWQTQAPVPAFQMPRSSLKTVLNARDNTEIQELENFFNWKLMIEEMAGLSPPSNRLAGVNPTNFEGIFRSQIPSLTAMQAHQNRNQQLWGYPADLINSNVLGSPQFRVDPSVYPRYDAFSMRSQSIASVNSELPSASSAAIELPTTFPGWGSPDGKLDWSINNDELNKMRKSYSSGFQN* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4320 531 Gene3D - 241 300 - -
Psa5g4320 531 ProSiteProfiles Zinc finger C3H1-type profile. 242 264 IPR000571 GO:0046872
Psa5g4320 531 PANTHER UNKEMPT FAMILY MEMBER 8 530 IPR045234 -
Psa5g4320 531 ProSiteProfiles Ankyrin repeat region circular profile. 95 129 - -
Psa5g4320 531 SMART c3hfinal6 272 295 IPR000571 GO:0046872
Psa5g4320 531 SMART c3hfinal6 237 263 IPR000571 GO:0046872
Psa5g4320 531 SUPERFAMILY Ankyrin repeat 43 144 IPR036770 -
Psa5g4320 531 Pfam Ankyrin repeats (3 copies) 53 129 IPR002110 GO:0005515
Psa5g4320 531 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 8 530 - -
Psa5g4320 531 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 242 262 IPR000571 GO:0046872
Psa5g4320 531 Gene3D - 19 159 IPR036770 -
Psa5g4320 531 ProSiteProfiles Ankyrin repeat profile. 95 130 IPR002110 GO:0005515
Psa5g4320 531 SMART ANK_2a 60 90 IPR002110 GO:0005515
Psa5g4320 531 SMART ANK_2a 95 127 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4320 Psa-Chr5 358899620 358901215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4320 11 526 C2H2 Transcription Factor Family AT5G12850 38.235 8.63e-124 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g4320 Ank_2 1.5e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4320 - - mtr:MTR_1g075890 675.241